PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc06g074170.2.1

Common Name

LOC101255703

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 410aa MW: 46254.3 Da PI: 8.9468

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc06g074170.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	32	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + pGfrF+Ptdeel+++yLkkk+eg++ + evi+ev+i k+ePwdLp k+v ++++ew+fFs+r +ky++g++++rat+sgyWkatgk++ Solyc06g074170.2.1 32 MFPGFRFSPTDEELISYYLKKKLEGSDKCV-EVISEVEIWKHEPWDLPaKSVIQSDNEWFFFSPRGRKYPNGSQSKRATESGYWKATGKER 121 579**********************777.99***********667777899****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+k+tLvf++grapkg++t+W+mhey + Solyc06g074170.2.1 122 NVKS-NSNIIGTKRTLVFHTGRAPKGQRTQWIMHEYCM 158 .999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-56	27	175	IPR003441	NAC domain
PROSITE profile	PS51005	54.255	32	176	IPR003441	NAC domain
Pfam	PF02365	1.5E-26	34	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009845	Biological Process	seed germination
GO:0009938	Biological Process	negative regulation of gibberellic acid mediated signaling pathway
GO:0033619	Biological Process	membrane protein proteolysis
GO:0048573	Biological Process	photoperiodism, flowering
GO:0071472	Biological Process	cellular response to salt stress
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MENEHVSSSS RNETTPRNNA NTEISIATAS SMFPGFRFSP TDEELISYYL KKKLEGSDKC 60 VEVISEVEIW KHEPWDLPAK SVIQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE 120 RNVKSNSNII GTKRTLVFHT GRAPKGQRTQ WIMHEYCMIG NTNYQDSMVV CRLRKNSEFH 180 LNDTPRNQRN QLVAIESATA LSGAGQLGSL ELVNVGECCS KEGSSSFHSH SVEQIDSGSE 240 SDKPTKEFSH HDSSGHFKDF DVEDDWFADI MKDDIIKLDD SSLNPRPVSM IPDRPESSEI 300 SNHEAQAAMS SVVPFQGTAN RRLRLVREIV MKCGVKESKP YKAIKKNKVG VGTTSSVRWL 360 RNMFSVKWMR QYVITIFVAT LIFLVMLLSL LGVSQQVKQR RHLLVLASS*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MENEHVSSSS RNETTPRNNA NTEISIATAS SMFPGFRFSP TDEELISYYL KKKLEGSDKC  60
VEVISEVEIW KHEPWDLPAK SVIQSDNEWF FFSPRGRKYP NGSQSKRATE SGYWKATGKE  120
RNVKSNSNII GTKRTLVFHT GRAPKGQRTQ WIMHEYCMIG NTNYQDSMVV CRLRKNSEFH  180
LNDTPRNQRN QLVAIESATA LSGAGQLGSL ELVNVGECCS KEGSSSFHSH SVEQIDSGSE  240
SDKPTKEFSH HDSSGHFKDF DVEDDWFADI MKDDIIKLDD SSLNPRPVSM IPDRPESSEI  300
SNHEAQAAMS SVVPFQGTAN RRLRLVREIV MKCGVKESKP YKAIKKNKVG VGTTSSVRWL  360
RNMFSVKWMR QYVITIFVAT LIFLVMLLSL LGVSQQVKQR RHLLVLASS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	23	175	8	164	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	23	175	8	164	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	23	175	8	164	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	23	175	8	164	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	23	175	11	167	NAC domain-containing protein 19
3swm_B	2e-45	23	175	11	167	NAC domain-containing protein 19
3swm_C	2e-45	23	175	11	167	NAC domain-containing protein 19
3swm_D	2e-45	23	175	11	167	NAC domain-containing protein 19
3swp_A	2e-45	23	175	11	167	NAC domain-containing protein 19
3swp_B	2e-45	23	175	11	167	NAC domain-containing protein 19
3swp_C	2e-45	23	175	11	167	NAC domain-containing protein 19
3swp_D	2e-45	23	175	11	167	NAC domain-containing protein 19
4dul_A	2e-45	23	175	8	164	NAC domain-containing protein 19
4dul_B	2e-45	23	175	8	164	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.6231	0.0	cell culture

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00280	DAP	Transfer from AT2G27300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc06g074170.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241333.1	0.0	NAC domain-containing protein 40-like
TrEMBL	A0A3Q7H0C4	0.0	A0A3Q7H0C4_SOLLC; Uncharacterized protein
STRING	Solyc06g074170.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4154	22	43
Representative plant	OGRP10249	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	3e-77	NAC domain containing protein 89

Link Out ? help Back to Top
Phytozome	Solyc06g074170.2.1
Entrez Gene	101255703

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]