PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc05g051460.2.1 | ||||||||
Common Name | LOC101257770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 314aa MW: 35640.9 Da PI: 4.4467 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.2e-18 | 64 | 117 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Solyc05g051460.2.1 64 KKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWK 117 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.2 | 7.3e-41 | 63 | 155 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl +qvk+LE++Fe ++kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy++Lk+++d+lk++ e++++++e+L +e+ Solyc05g051460.2.1 63 EKKRRLRVDQVKALEKNFEVDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYNVLKANFDSLKHNYESIQHDNEALLKEI 153 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Solyc05g051460.2.1 154 NE 155 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.151 | 59 | 119 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.84E-19 | 61 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.1E-17 | 62 | 123 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.3E-15 | 64 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.16E-16 | 64 | 120 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-19 | 67 | 126 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-6 | 90 | 99 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 94 | 117 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-6 | 99 | 115 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 8.0E-18 | 119 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0030308 | Biological Process | negative regulation of cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKRVRSNDSL GAPLISMCQN TADEENNWNN HAYSRDFQIQ SMLESLDDDE ATTYVEESGV 60 GSEKKRRLRV DQVKALEKNF EVDNKLEPER KVKLAQELGL QPRQVAIWFQ NRRARWKTKQ 120 LERDYNVLKA NFDSLKHNYE SIQHDNEALL KEINELKSKL HGGNSEIKIA VKEEAFDSES 180 DDKRTEQSNQ CNNSNTELNF DTIIMNPSIN FTDFKDGSSD SDSSAILNED NAVISSGAFL 240 IKSGSGSGSS SPDSNSSLNC FQFLESNEVN FSSSQFVKLE EHNFFNGEES CSTLLFTDEQ 300 APTLHWYCPD DWN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.15893 | 0.0 | leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00051 | PBM | Transfer from AT4G40060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc05g051460.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004240025.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A0A3Q7GL15 | 0.0 | A0A3Q7GL15_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g051460.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2718 | 24 | 53 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-67 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Solyc05g051460.2.1 |
Entrez Gene | 101257770 |
Publications ? help Back to Top | |||
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