PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc03g098320.2.1 | ||||||||
Common Name | LOC101255972 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 459aa MW: 49794.5 Da PI: 5.3748 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G W+ I +++g +t+ q++s+ qk+ Solyc03g098320.2.1 55 REKWTEEEHQRFLEALKLYGRA-WRQIEEYVG-SKTAIQIRSHAQKF 99 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.97E-16 | 49 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.179 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.3E-17 | 53 | 102 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.6E-12 | 54 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-8 | 55 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-12 | 55 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.75E-9 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MVADAVNQVE GSQQGASSMI SSKLETVATQ GKAPTCLANE NVLKARKPYT ITKQREKWTE 60 EEHQRFLEAL KLYGRAWRQI EEYVGSKTAI QIRSHAQKFF AKVARDSGND GDESLNAIDI 120 PPPRPKKKPL HPYPRKMADS SIANKAVSGQ PERSPSPNAS GRESCSPDSV LPAIGLGIAE 180 YSVAEQQNSR FSPVSCTTDA HTANIISTEN DDESMSSNSN NVDAIHVTLK PVAASISLIT 240 NSEFMECNIV HMENSCNGEK LAVEPPSASI KLFGKTVFVP DANNLAPPAP YNTEKEKEIS 300 NEDVLHGFQA NQANSPFVLA MVPGNMIPPA SWLSQNMLEN NRESTAAFPA ATISWWSWYQ 360 DLLYRSISSC GQTTVEAASH CQGLKDEEPQ REGSSTGSSI GSASEVDDGN TSCETVESKC 420 TTKIKGFVPY KRCLAERDGK SSGAVLEERE SQRVRVCS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8142 | 0.0 | callus| fruit| leaf| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | Transfer from AT1G18330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc03g098320.2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235390.1 | 0.0 | protein REVEILLE 7 | ||||
TrEMBL | A0A3Q7FNA0 | 0.0 | A0A3Q7FNA0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g098320.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7447 | 21 | 27 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18330.1 | 2e-36 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc03g098320.2.1 |
Entrez Gene | 101255972 |
Publications ? help Back to Top | |||
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