PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.2G205900.1.p
Common NameLOC101785308, SETIT_029708mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 475aa    MW: 47157.8 Da    PI: 6.9342
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.2G205900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12256301555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Seita.2G205900.1.p 256 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 301
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.59E-13249305No hitNo description
SuperFamilySSF474595.89E-17249311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16253310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9256301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQISLD DLRAAAGSAG GVHDDFLDQM LGGLPPSAWP ELASAAGAKV  60
PEGGAQAEGM QQHQHQQFGG GLYDESALLA SRLRQHQISG GPGGAESAAA AKQMVLQQLA  120
DLRQGHHMLL QGMGRSTGGG GDGGLLLPLS LGSGGSGGDV QALLKAAANS AGGEAGGVFG  180
GAFAGSLQQQ QHQHFQQHPQ QTAPLPGQGF GGGGGGGGGG ASAGASQPQA GASGGGAAAP  240
PRQRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN ANKTDKASML DEIIDYVKFL  300
QLQVKVLSMS RLGGAAAVAP LVADMSSEGR GGAPAAAGSD GLAVTEQQVA KLMEEDMGTA  360
MQYLQGKGLC LMPVSLATAI SSATCHMRPP VGAAGPAGLG VAAAAHHMAA MRLPPGMNGS  420
GGAESAAAVP ASPSMSVLTA QSAMANGAGG ADGEGSHSQQ QQQHPKDAAS VSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.2G205900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956830.10.0glycine, alanine and asparagine-rich protein
SwissprotQ9ZUG92e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLK3ZSX80.0K3ZSX8_SETIT; Uncharacterized protein
STRINGSi029708m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-48LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]