PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676788430
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 279aa    MW: 32072.9 Da    PI: 6.9311
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676788430genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l++ +++ G  +W++ ++  g++R++k+c++rw +yl
        676788430 14 KGPWTAEEDKKLINFITKNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.59.5e-1671111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +  E++l ++++++lG++ W++Ia++++ gRt++++k++w+++
        676788430  71 SDAEEQLVINLHALLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      778***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-22562IPR009057Homeodomain-like
PROSITE profilePS5129414.593961IPR017930Myb domain
SuperFamilySSF466894.49E-2711108IPR009057Homeodomain-like
SMARTSM007179.6E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-141461IPR001005SANT/Myb domain
CDDcd001673.65E-91661No hitNo description
PROSITE profilePS5129427.01962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2463116IPR009057Homeodomain-like
SMARTSM007171.4E-1466114IPR001005SANT/Myb domain
CDDcd001672.03E-1071112No hitNo description
PfamPF002493.7E-1471111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDKKLINFIT KNGHCCWRAL PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL SDAEEQLVIN LHALLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKME  120
IDPVTHQSLN KVSTDKKSFD KSETSLKAGN VKRIDTERIE IDRTTIKSTD ESSTITHQNI  180
STDDYELVGS IIHNDDDLFK LLWTDDTSWI NNNNVDVGRS ATENNNFSAG DYYSTWPLEE  240
KNVESWTFLD NCQDFGVQDF GFEFYHDFGQ SSIETGQKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676788430
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396775.11e-166protein ODORANT1
SwissprotQ50EX64e-87ODO1_PETHY; Protein ODORANT1
TrEMBLV4LEM91e-164V4LEM9_EUTSA; Uncharacterized protein
STRINGXP_006396775.11e-165(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.11e-145myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]