PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676768036
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 343aa    MW: 35980 Da    PI: 6.6497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676768036genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11146191555
                HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  676768036 146 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 191
                99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-13139195No hitNo description
SuperFamilySSF474594.06E-17139200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.409141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-16143200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9146191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMNSSLLTPS SSSHIQTPAT TFDHEDFLDH IFASSPWPSD EAHPPPPTDA FVDSRHQQIM  60
MMPLSSHHQT EVGDGSSVHA LYNGFSTGGS LPFHGVGSGL MNQQGQTSTQ TQPQASASTA  120
TGGTAAAPPQ TRTKVRARRG QATDPHSIAE RLRRERIAER MKALQELVPN GNKTDKASML  180
DEIIDYVKFL QLQVKVLSMS RLGGAASVSS QISEAGGSQG NATSAVASGN QTTGNSNDNL  240
TMTEHQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST ATCHSRNPLI PGAVDVGGRP  300
SSPNLSGMTV QSTNTVQLNG NGNGVTEGSS SIAVKEAVSL SKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150155RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676768036
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1763700.0AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBankBT0265120.0BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438414.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG91e-180BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A1J3GGI30.0A0A1J3GGI3_NOCCA; Transcription factor bHLH66 (Fragment)
STRINGXP_010472429.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-156LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]