PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731332
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 210aa    MW: 23959.1 Da    PI: 10.0144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731332genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-162673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l +++  +G g W+++a+  g++Rt+k+c++rw++yl
        676731332 26 KGPWTMEEDLILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWLNYL 73
                     79********************************************97 PP
2Myb_DNA-binding56.46.6e-1879122146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++++lG++ W++Ia++++ gRt++++k++w++
        676731332  79 RGNITAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 122
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-221876IPR009057Homeodomain-like
PROSITE profilePS5129414.9992173IPR017930Myb domain
SuperFamilySSF466891.72E-2924120IPR009057Homeodomain-like
SMARTSM007173.2E-122575IPR001005SANT/Myb domain
PfamPF002495.4E-152673IPR001005SANT/Myb domain
CDDcd001676.20E-92873No hitNo description
PROSITE profilePS5129424.79974128IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2477127IPR009057Homeodomain-like
SMARTSM007172.9E-1678126IPR001005SANT/Myb domain
PfamPF002492.2E-1679122IPR001005SANT/Myb domain
CDDcd001677.92E-1383122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MLTMKKTGRG KQRITSQKDD EETVRKGPWT MEEDLILFNY ILNHGEGLWN SVAKASGLKR  60
TGKSCRLRWL NYLRPDVRRG NITAEEQLLI IQLHAKLGNR WSKIAKHLPG RTDNEIKNFW  120
RTKIQKHVKV SSSSEYATNN IRHCSGNSQS SVITTTDQGS SSKAFDMAES LISPATTTTS  180
FHVMEQSNDS YWNVEDLWPV QLLNGDHQVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-272612827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00324DAPTransfer from AT3G01530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731332
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585517.11e-134PREDICTED: transcription factor MYB57-like
SwissprotQ9SSA11e-116MYB57_ARATH; Transcription factor MYB57
TrEMBLA0A078IJ111e-133A0A078IJ11_BRANA; BnaC05g48910D protein
STRINGBo5g155050.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01530.11e-118myb domain protein 57