PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011078667.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

bHLH

Protein Properties

Length: 418aa MW: 43514.6 Da PI: 6.7484

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011078667.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	230	275	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_011078667.1 230 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 275 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.67E-13	223	279	No hit	No description
SuperFamily	SSF47459	4.84E-17	223	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-16	227	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-9	230	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence Send to blast
MRQPNGERDL PGINSLNSLL NQHQIPFQEI HNHGQPQMLP SSSFDPASSH DDFLEQMLSS 60 VPSSAASSFP WADDQGATGM VGNLEEPSAA VLASKMRQQQ ISNGAAKALL LQQQLLLSRG 120 LAAAANGQMP HADHNDVVDA PSFNSANLAN DASVKALFSG FSGSLGQTSN HAQHFHNPQG 180 GGALPQTQNF GAPATPAMSQ PAASGSSGGG AAGQPRQRVR ARRGQATDPH SIAERLRRER 240 IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADKS 300 TEGRSGNGMQ TASSSNEGMT VAEQQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA 360 TSHSRNPLAS SNNPLLNGEP GGPSSPSMSA LTVQSATIGG ASGGEVSLKD PTAASKKE

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence Send to blast

MRQPNGERDL PGINSLNSLL NQHQIPFQEI HNHGQPQMLP SSSFDPASSH DDFLEQMLSS  60
VPSSAASSFP WADDQGATGM VGNLEEPSAA VLASKMRQQQ ISNGAAKALL LQQQLLLSRG  120
LAAAANGQMP HADHNDVVDA PSFNSANLAN DASVKALFSG FSGSLGQTSN HAQHFHNPQG  180
GGALPQTQNF GAPATPAMSQ PAASGSSGGG AAGQPRQRVR ARRGQATDPH SIAERLRRER  240
IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVADKS  300
TEGRSGNGMQ TASSSNEGMT VAEQQVAKLM EEDMGSAMQY LQGKGLCLMP ISLATAISTA  360
TSHSRNPLAS SNNPLLNGEP GGPSSPSMSA LTVQSATIGG ASGGEVSLKD PTAASKKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	239	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011078667.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078667.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	2e-88	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A022QYY5	0.0	A0A022QYY5_ERYGU; Uncharacterized protein
STRING	Migut.K00336.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3759	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-54	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]