PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0276s0002.2.p
Organism
Sphagnum fallax
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family ERF
Protein Properties Length: 683aa    MW: 73478.8 Da    PI: 4.8836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0276s0002.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-20262311255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdps+     r +lg+f taeeAa+a+++a+++++g
  Sphfalx0276s0002.2.p 262 KFRGVRQRP-WGKWAAEIRDPSK---GVRLWLGTFETAEEAAQAYDKAARAIRG 311
                           89*******.**********965...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.87E-34262319No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32262319IPR001471AP2/ERF domain
PROSITE profilePS5103223.696262319IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22262319IPR016177DNA-binding domain
SMARTSM003801.4E-39262325IPR001471AP2/ERF domain
PfamPF008471.2E-12262311IPR001471AP2/ERF domain
PRINTSPR003671.8E-10263274IPR001471AP2/ERF domain
PRINTSPR003671.8E-10285301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MNTTVVVSSN MPGPQTLRRS FPAAAVPPKV KVVCKKALKR EFATESEEDG WDVQQLQPPQ  60
ICPKRVRVIC TDPDATDSSS DEEGNFRRRN LICNNLHRRR RHVQEIDIHC TDGGAFSSSS  120
SDSEEDVEVP SYHRIFTAQA MRCSLNCASP IWTATTSSGA VVPPQLDKVY KTSGQSKKKI  180
TAAAATEKMI SKTASNKLLP PQRHAVKLLD PAVVANSKLS AAAANVTSKP AKTSSKSLAT  240
ASKAASKTGG GVVALEDGKS HKFRGVRQRP WGKWAAEIRD PSKGVRLWLG TFETAEEAAQ  300
AYDKAARAIR GPHAHTNFPG LEHHDQQHEL LANPETASAA TAMMKVGDVA QSEDARALKS  360
TRVSKKDALS SHPDNTKEQQ DVTVNAAALL EKDLKGSGKM VGPVLKPEKK HLCPLEIVEV  420
CTERVSSSDE SCFTAVFEPE AAEDVSPYVS ESCKGSSALI RSPKDGMDDD VHSLGEPKLE  480
EGLPCNDDFP HPDEECSNFL LCSPSSVLDG CSTSYSKLLP GSIAAAAADH SDALCHPFAT  540
GGSLAMEESF GLAETTASIG SDSHTPNILD CTSLKLVTAR QGDNDEEKVD KDAAVGSDSD  600
QEGSVNEDNN HTELHNLADL QHAFLSDDEF SFPDCHEFEE DLMMEFAAEF DLLGDEDKIG  660
DLGFECGSEA MNWFSPPDIM IV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-22263319360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-22258319163ATERF1
3gcc_A8e-22258319163ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
186100RRRNLICNNLHRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-20ERF family protein