PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G088100.1.p
Common NameSb09g008120, SORBIDRAFT_09g008120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 588aa    MW: 64288.5 Da    PI: 6.5952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G088100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH437.9e-14441486454
                           HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+iLe Av +I +L
  Sobic.009G088100.1.p 441 SHVEAERQRREKLNKRFCALRAIVPNiS------KMDKASILEDAVMHIGDL 486
                           799***********************66......***************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-4754243IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.21E-14435491No hitNo description
PROSITE profilePS5088816.622437486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-18439507IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-18441503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-11441486IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13443492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MKTEVEEVSI GQFWTEEDKA LCSSVLGSDA FTYLTKCGGA ISEGLVAASV LADLQNKLQN  60
LVEADDQSIR WDYAIFWQLS RTKSGAIVLG WGDGSCREPH DSEIGFATSM SVDDASLVTR  120
QKMRKRVLQR LHTAFAGADE EDYAPGIDQV TNTEIFFLAS MYFAFPRHVG GPGKVFGAEA  180
PLWIPNNKHN VSPANYCYRG FLANAAGFKT IVLVPFKAGV LEVGSMQNVP ESAEALQTIR  240
SMFLGTCSDR IAIEKHEDSS SVQISPGLTK IFGKDLSIRQ PSDSKGADPS KVDESSMIAQ  300
KSGGGESRLL PNLRKGLQNF SWSQSRGLSS DQQKFGNGIL VETSETANCS NGASHSTTVS  360
PFQLQNPQQI LAQQASQPRG PMQIDFRVGS SSKFGVLISQ KAMLDVDKGN ANDLFDEERE  420
GRQPRKRERK PTNGREEPPL SHVEAERQRR EKLNKRFCAL RAIVPNISKM DKASILEDAV  480
MHIGDLKKKL EKLEAERDQL PEQTPGPEVD IQVVQGEILV RAVSQIENHP IQKVLQAFED  540
AEVKVGESKV TANNGTVVHS FVIKSPGSEQ HTRKKLLASI SNATSAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-22434511278Transcription factor MYC2
5gnj_B2e-22434511278Transcription factor MYC2
5gnj_E2e-22434511278Transcription factor MYC2
5gnj_F2e-22434511278Transcription factor MYC2
5gnj_G2e-22434511278Transcription factor MYC2
5gnj_I2e-22434511278Transcription factor MYC2
5gnj_M2e-22434511278Transcription factor MYC2
5gnj_N2e-22434511278Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.78050.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G088100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440844.10.0transcription factor bHLH13
TrEMBLC5YV930.0C5YV93_SORBI; Uncharacterized protein
STRINGSb09g008120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.34e-69bHLH family protein