PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.007G182101.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 360aa    MW: 37136.3 Da    PI: 6.0775
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.007G182101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.4e-3767173699
                   TCP   6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 
                            r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ +    ++ss+      
  Sobic.007G182101.1.p  67 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQSSSssspss 154
                           6999********************************************************77777443.33333333333333111122 PP

                   TCP  89 ........kaaksaakskk 99 
                                   +a++++  +k 
  Sobic.007G182101.1.p 155 lttvvdgdEASAAKRRRKL 173
                           2233433211111112222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3069162IPR005333Transcription factor, TCP
PROSITE profilePS5136927.38169123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEAQAQDNRA EEGDGARQHH AAGGVATATA AAGMAMGAIP MHGFMVPKPE PVEFFGGMAM  60
VRSKPPPRNR DRHTKVEGRG RRIRMPAACA ARIFQLTREL GHKSDGETIR WLLQQSEPAI  120
IAATGTGTVP AIATTVDGVL RIPTQSSSSS SPSSLTTVVD GDEASAAKRR RKLQPTRAAA  180
GASPLATAAP AAAYYPVIAD PLLQGTGGAA ISVPSGLAPI TASGAPQGLV PVFAVPATGS  240
PGGGGGNRMI PQATAVWMVP QPGAAAGGVA GTQPTQFWAI QSAPQLINIG GAQTAVFPAA  300
VNVADFHHQQ QHQPISSMSH NSNSEQLHLQ QSHEQQRDHP EEDDDDDDDE PVSDSSPEE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings and leaves, mostly in the lower region rich in dividing cells. {ECO:0000269|PubMed:9338963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.007G182101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458660.0EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319992.10.0transcription factor PCF2-like
SwissprotA2YXQ11e-157PCF2_ORYSI; Transcription factor PCF2
SwissprotQ6ZBH61e-157PCF2_ORYSJ; Transcription factor PCF2
TrEMBLA0A1Z5RAI30.0A0A1Z5RAI3_SORBI; Uncharacterized protein
STRINGORUFI08G24920.11e-155(Oryza rufipogon)
STRINGOS08T0544800-011e-155(Oryza sativa)
STRINGONIVA08G25460.11e-155(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39123167
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.19e-45TCP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]