PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.002G202600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 46014.4 Da PI: 7.004 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.5e-12 | 259 | 304 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Sobic.002G202600.2.p 259 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 304 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.63E-17 | 252 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.42E-13 | 252 | 308 | No hit | No description |
PROSITE profile | PS50888 | 17.39 | 254 | 303 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-16 | 256 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-9 | 259 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 260 | 309 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 465 aa Download sequence Send to blast |
MQPTTREMQA MAAAGQISLD DLRAAAGAAG GGVHDDFLDQ MLGGLPPSAW PELASAAGGK 60 APDGGAQAEG MQQHQHQHQH FGGGLYDESA LLASRLRQHQ ISGGPTGGGA EAAKQMVLQQ 120 LADLRQGHHM LLQGMGRSTG GGGGSGDGGL LLPLSLGSGG SGGDVQALLK AAANSAGGEA 180 AGVFGGSFAG SLQQQQQQHF QSHPQQTAPL PGQGFGGGGG GAGASGGVSQ PQAGAAGGGA 240 AAPPRQRVRA RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV 300 KFLQLQVKVL SMSRLGGAAA VAPLVADMSS EGRGGAGAAA AAGSDGGLAV TEQQVAKLME 360 EDMGTAMQYL QGKGLCLMPV SLASAISSAT CHMRPPVGAA GLGVAAAAAH HMAAMRLPPH 420 GMNGGAGADA SAMANGAGAG GADGDASHSQ QQQHSKDAAS VSKP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 263 | 268 | RLRRER |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.002G202600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT062076 | 0.0 | BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds. | |||
GenBank | KJ727938 | 0.0 | KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021307996.1 | 0.0 | transcription factor bHLH66 isoform X2 | ||||
TrEMBL | A0A1W0W579 | 0.0 | A0A1W0W579_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G350165_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24260.1 | 2e-44 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.002G202600.2.p |