PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G079500.1.p
Common NameSb01g007170, SORBIDRAFT_01g007170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 292aa    MW: 30103.2 Da    PI: 8.1577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G079500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-0598120123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ CgksFs+   L  H  +H
  Sobic.001G079500.1.p  98 FRCSVCGKSFSSYQALGGHKTSH 120
                           89**********99998888777 PP
2zf-C2H212.30.0005184206123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C+k F++   L  H r+H
  Sobic.001G079500.1.p 184 HRCSICHKEFPTGQALGGHKRKH 206
                           79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-1298121IPR007087Zinc finger, C2H2
SuperFamilySSF576678.5E-998120No hitNo description
SMARTSM003550.005498120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92698125IPR007087Zinc finger, C2H2
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576678.5E-9179206No hitNo description
PfamPF139121.4E-12183208IPR007087Zinc finger, C2H2
SMARTSM003550.043184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSSMELLHAV IPEKQSEELM APAAATTTTT TSSSATAMSG DEVAHVPQGW AKKKRSRRQR  60
SEEENLALCL LMLSRGGNHR VQAAPPLVPS AAPVAAEFRC SVCGKSFSSY QALGGHKTSH  120
RVKLPTPPAP PAAAVPAAVP LVEVEAPAPL TVIPPPPVEV VVREPATSST AASSDGAAAS  180
SRVHRCSICH KEFPTGQALG GHKRKHYDGG VGGSSAASTD VLAATAPAAT AETSEVGSSG  240
NGSSAARAFD LNLPAVPEFV FRCGKAGKMW EEDEEVQSPL AFKKPRLLMT A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.157770.0callus| leaf| ovary| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G079500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677900.0EU967790.1 Zea mays clone 306092 zinc-finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.10.0zinc finger protein 1
SwissprotQ424302e-99ZFP1_WHEAT; Zinc finger protein 1
TrEMBLC5X0310.0C5X031_SORBI; Uncharacterized protein
STRINGSb01g007170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-23zinc-finger protein 2