PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_08399.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 153aa    MW: 17280.5 Da    PI: 9.191
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_08399.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161964148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg ++++E++l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
  Rsa1.0_08399.1_g00003.1 19 RGGMSPQEQDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 64
                             6779******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-8227IPR009057Homeodomain-like
SuperFamilySSF466895.7E-20274IPR009057Homeodomain-like
PROSITE profilePS5129424.2581468IPR017930Myb domain
SMARTSM007172.2E-151866IPR001005SANT/Myb domain
PfamPF002491.1E-141964IPR001005SANT/Myb domain
CDDcd001672.92E-122264No hitNo description
Gene3DG3DSA:1.10.10.605.2E-212865IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
GGKSCRLRWK NYLRPNIKRG GMSPQEQDLI IRMHKLLGNR WSLIAGRLPG RTDNEVKNYW  60
NTHLNKKTNG RKQNATESVE ATTPWVDKPV MSAEVRGIHG GGDGEEGTTT TTWMEETNFF  120
ARIDSPLPLA SHYPSDTLSF DPSFAFTDCF PLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1926942109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_08399.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470563.11e-112PREDICTED: transcription factor MYB82-like
SwissprotQ9LTF72e-80MYB82_ARATH; Transcription factor MYB82
TrEMBLA0A078JF762e-87A0A078JF76_BRANA; BnaC02g44890D protein
STRINGBra022602.1-P9e-84(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.17e-72myb domain protein 82