PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_03136.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27218.6 Da PI: 9.4375 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.9e-17 | 14 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g+WT eEd++l+d+++ +G g+W++ ++ g + R++k+c++rw +yl Rsa1.0_03136.1_g00003.1 14 KGAWTNEEDQRLIDYIRIHGEGCWRSLPKSAGltrLLRCGKSCRLRWINYL 64 79***********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++ Rsa1.0_03136.1_g00003.1 70 RGNFSDEEDKVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 5 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.178 | 9 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-28 | 13 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 13 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 14 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-11 | 16 | 64 | No hit | No description |
PROSITE profile | PS51294 | 27.232 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-27 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-16 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.07E-12 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTNE EDQRLIDYIR IHGEGCWRSL PKSAGLTRLL RCGKSCRLRW 60 INYLRPDLKR GNFSDEEDKV IIKLHSLLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL 120 SHGIDPQTHR PIKDSETVPS QLSTAVIVPP QNDAVEKSFT VRQKTENFSD NVASTSGTTT 180 DEDLQQNGGC YYNDYSGDRE LNLDLTLGSG STSFVRSGRK SGTGSSADSK PGRVPVMAAR 240 LSLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 14 | 119 | 7 | 108 | B-MYB |
1h8a_C | 9e-29 | 13 | 119 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_03136.1_g00003.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018474561.1 | 0.0 | PREDICTED: transcription repressor MYB6-like isoform X1 | ||||
Swissprot | Q38851 | 1e-134 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A3P6A982 | 1e-145 | A0A3P6A982_BRACM; Uncharacterized protein | ||||
STRING | Bo3g044210.1 | 1e-141 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-136 | myb domain protein 6 |