PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01233.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 322aa    MW: 36638.9 Da    PI: 6.505
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01233.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding612.5e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd++l+++++++G g+W++ +++ g++R++k+c++rw +yl
  Rsa1.0_01233.1_g00001.1 14 KGPWTPEEDQKLINYIRKHGHGSWRALPKESGLNRCGKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding582.2e-1867111147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg++T+eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  Rsa1.0_01233.1_g00001.1  67 RGNFTAEEDQTIINLHSLLGNK-WSSIAGHLP-GRTDNEIKNYWNTH 111
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.333961IPR017930Myb domain
SuperFamilySSF466894.41E-3311108IPR009057Homeodomain-like
SMARTSM007171.7E-161363IPR001005SANT/Myb domain
PfamPF002496.7E-181461IPR001005SANT/Myb domain
CDDcd001678.50E-131661No hitNo description
PROSITE profilePS5129427.90862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-2865116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1667111IPR001005SANT/Myb domain
CDDcd001674.60E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQKLINYIR KHGHGSWRAL PKESGLNRCG KSCRLRWTNY  60
LRPDIKRGNF TAEEDQTIIN LHSLLGNKWS SIAGHLPGRT DNEIKNYWNT HIRKKLLQMG  120
IDPVTHRPRT DLNVLAALPQ LLAAANFNNL LTLNQNIHLD ATSVAKAHLL HSMIQVLNNN  180
NTSSSSFDIH GTNNNIFDQS SFLENRPNIS ENLYDPIQNL SHNDHQPLDS FFSPIGVFSH  240
QDDQDIIPPL ISASSDESKQ TQMMIKNKEI LKHSDHTSNP SSTSTFTQDH QPWCDIIDDE  300
ASDSYWKEII EQTCSEPWPF LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00327DAPTransfer from AT3G02940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_01233.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493100.0AF249310.2 Arabidopsis thaliana putative transcription factor (MYB107) mRNA, complete cds.
GenBankAY5195830.0AY519583.1 Arabidopsis thaliana MYB transcription factor (At3g02940) mRNA, complete cds.
GenBankBT0256600.0BT025660.1 Arabidopsis thaliana At3g02940 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437345.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9S9Z25e-89MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0D3AFX80.0A0A0D3AFX8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GB010.0A0A3P6GB01_BRAOL; Uncharacterized protein
STRINGBo1g155040.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.10.0myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]