PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00502.1_g00023.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 333aa    MW: 37260.2 Da    PI: 5.8784
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00502.1_g00023.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12.1e-181461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd +lv +++q+G+g+W+++++  g+ R+ k+c++rw +yl
  Rsa1.0_00502.1_g00023.1 14 KGPWTPEEDIILVSYIQQHGPGNWRSVPKNTGLLRCSKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding49.78.3e-1667112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Rsa1.0_00502.1_g00023.1  67 RGNFTQHEEKTIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129425.289965IPR017930Myb domain
SuperFamilySSF466891.58E-3012108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001676.05E-121661No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2465116IPR009057Homeodomain-like
PROSITE profilePS5129418.52566116IPR017930Myb domain
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.8E-1467112IPR001005SANT/Myb domain
CDDcd001672.01E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRPPCCEKI EVKKGPWTPE EDIILVSYIQ QHGPGNWRSV PKNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TQHEEKTIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLEKKLQLQR  120
QNGITNEDNT NMTEMSSYDN NNNNICSSNK RIANKGQWEK KLQTDINMAK QALFQALSLD  180
QPTSSISPDL GSPKPHHSAT ATYASSTDNI SKLLQNWASS SSSVPNTSTI FSNDRSSSTG  240
EGGVLDHQSL FSTNSESGSV DEKLILMTET SIFKGESKPK VDTEASTDDH DSLSSIEKWL  300
FDDQGLVQCD DDQDLMDASL EGKKTDNNGQ DLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-251111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00235DAPTransfer from AT1G74650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00502.1_g00023.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756530.0KM975653.1 Brassica napus MYB transcription factor 31.1 (MYB31.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444986.10.0PREDICTED: myb-related protein 306-like
SwissprotQ9SN781e-107MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A0D3D0P10.0A0A0D3D0P1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G1290.0A0A3P6G129_BRAOL; Uncharacterized protein
STRINGBo6g118860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-172myb domain protein 31
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]