PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2120_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 211aa MW: 23714.4 Da PI: 5.8916 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.9e-18 | 10 | 54 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia ++ gRt++++k++w+++ RrC2120_p1 10 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLA-GRTDNEIKNYWNTH 54 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-27 | 1 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.18E-17 | 1 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 28.618 | 5 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-17 | 9 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 10 | 54 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.31E-13 | 12 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MNYLRPDLKR GNFTEEEDEL IIKLHSLLGN KWSLIAGRLA GRTDNEIKNY WNTHIKRKLV 60 SRGIDPNTHR PINESAIHPS KTTTPSLLND EPVQFDLAGP DQHHTVKPEP MVLDREEVNN 120 DINNNNSTSS GTTSDDDCVL NLELSVGLAT TRYQSTRKAN LDSVESTGRW GSELFGAQAE 180 VCLCCRIGFH NESCPNCRVS DARTIWESKI L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-15 | 2 | 59 | 51 | 108 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC966736 | 1e-137 | KC966736.1 Brassica napus MYB transcription factor 3 (MYB3.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115618.1 | 1e-132 | PREDICTED: transcription factor MYB3 | ||||
Swissprot | Q9S9K9 | 3e-84 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A3P5Y4D6 | 1e-133 | A0A3P5Y4D6_BRACM; Uncharacterized protein | ||||
STRING | Bra024526.1-P | 1e-131 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 4e-81 | myb domain protein 3 |