PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC19931_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 103aa    MW: 11803.8 Da    PI: 10.7534
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC19931_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd+ lv +++++G  +W++ +++ g+ R++k+c++rw++yl
      RrC19931_p1 26 KGEWTAEEDQNLVAYINEHGVSDWRSLPKRAGLQRCGKSCRLRWLNYL 73
                     799********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-212076IPR009057Homeodomain-like
PROSITE profilePS5129421.8392177IPR017930Myb domain
SMARTSM007171.1E-132575IPR001005SANT/Myb domain
PfamPF002495.2E-162673IPR001005SANT/Myb domain
SuperFamilySSF466896.42E-2328101IPR009057Homeodomain-like
CDDcd001678.09E-112873No hitNo description
Gene3DG3DSA:1.10.10.609.4E-1077100IPR009057Homeodomain-like
PROSITE profilePS512947.92978103IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MNVTVGLVGL RKMGRKKWVD GDGMKKGEWT AEEDQNLVAY INEHGVSDWR SLPKRAGLQR  60
CGKSCRLRWL NYLRPGIKRG KFTPQEEEKI IKLHAVLGNR LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1426100780B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747537e-94KF974753.1 Brassica napus MYB transcription factor 47 (MYB47.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439335.14e-66PREDICTED: transcription factor MYB29-like isoform X1
RefseqXP_022559645.16e-67transcription factor MYB106-like isoform X1
SwissprotQ9LE633e-40MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0D3DTQ73e-63A0A0D3DTQ7_BRAOL; Uncharacterized protein
STRINGBo8g091100.16e-64(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.11e-54myb domain protein 47