PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1841_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 408aa    MW: 45866.7 Da    PI: 6.7579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1841_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.21.1e-1281103426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 e C+f+ rtG CkyG++CkF+H+
  RrC1841_p5  81 EDCSFYIRTGSCKYGSSCKFNHP 103
                 89********************9 PP
2zf-CCCH309.1e-10131151525
                 --SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                 +C++++rtG CkyG++C+F+H
  RrC1841_p5 131 ECKYYFRTGGCKYGETCRFSH 151
                 6******************** PP
3zf-CCCH36.58e-12175198326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++C+f++r+G Ck+G+ CkF+H+
  RrC1841_p5 175 EKECPFYMRNGSCKFGGDCKFNHP 198
                 679********************9 PP
4zf-CCCH25.22.9e-08309334227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++C+++ +tG Ck+ ++Ck++H++
  RrC1841_p5 309 DQPECSYYVKTGDCKFKSKCKYHHPK 334
                 689*********************96 PP
5zf-CCCH331e-10355379226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C +++r+G+Ck+G+ C+F H+
  RrC1841_p5 355 DQSMCTHYSRYGICKFGPACRFDHS 379
                 5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-675105IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-577104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.12277105IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-981103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-583102IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4126153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549126154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6128155IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7131151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5132153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971172200IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5174199IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6174200IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9175198IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-4178197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0092307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751307335IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5311337IPR000571Zinc finger, CCCH-type
SMARTSM003560.019353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.906353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6354381IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-5357379IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7359379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSKPDPDPRQ PSGSSSEKDP VAADHIREEE LSEDLRNVVL LDEATEELNV PISVSDCDQK  60
EEEEEGRERR TMVYPVRPDA EDCSFYIRTG SCKYGSSCKF NHPLRRNPQI GREKVRERER  120
EEDVENPRLM ECKYYFRTGG CKYGETCRFS HTKQQTSLPS RPELNFLGLP IRAGEKECPF  180
YMRNGSCKFG GDCKFNHPDP KAVGGVDSPL FRGNNGGSFP PKDASQASST SWSSSRHMNG  240
TGTGTGTAPF IPLMYSQNRG VSPRTPEWSG YQAPFAYQPE RSVLPPSTYS AETSSFSQLP  300
AEEFPERPDQ PECSYYVKTG DCKFKSKCKY HHPKNRLPKQ SQSSFNDKGL PLRPDQSMCT  360
HYSRYGICKF GPACRFDHSI PPTFSSSSSQ TVETPQLGGN ANENDSWN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287901e-103AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
GenBankBT0202231e-103BT020223.1 Arabidopsis thaliana At5g63260 mRNA, complete cds.
GenBankBT0204431e-103BT020443.1 Arabidopsis thaliana At5g63260 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018432864.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A078HUZ80.0A0A078HUZ8_BRANA; BnaA06g22640D protein
TrEMBLM4FC030.0M4FC03_BRARP; Uncharacterized protein
STRINGBra038619.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein