PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1531_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | MYB_related | ||||||||
Protein Properties | Length: 227aa MW: 26064 Da PI: 6.508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.5 | 2e-10 | 22 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 rg+ T eE+ +++++ ++G++ + Ia++++ gRt++++k++w++ RrC1531_p5 22 RGNITLEEQFMILKLHSLWGNRyitKKSHIAQYLP-GRTDNEIKNYWRT 69 7999*********************99********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 7.562 | 1 | 16 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.37E-15 | 2 | 79 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-5 | 2 | 15 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.0E-17 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.575 | 17 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-6 | 21 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-8 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.13E-7 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
LKRTGKSCRL RWLNYLRPDV RRGNITLEEQ FMILKLHSLW GNRYITKKSH IAQYLPGRTD 60 NEIKNYWRTR VQKQAKHLRC DVNSNLFKET MKNVWMPRLV ERINAQTPSP TYEQVDSMVT 120 DPSQPTAEPS PVEPGFVQFN QNHYCHEQHF VPASDVSATS SNSPADETLS EVQGGVVKGS 180 GYEPADQTGF GGFNDWGCVG GDNTWTDDES FWFLQELCNE TTSYSYN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-14 | 3 | 75 | 40 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438809.1 | 1e-163 | PREDICTED: transcription factor MYB108 | ||||
TrEMBL | A0A397Z7E1 | 1e-139 | A0A397Z7E1_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CJT9 | 1e-139 | M4CJT9_BRARP; Uncharacterized protein | ||||
STRING | Bra004473.1-P | 1e-140 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 1e-136 | myb domain protein 2 |