PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC11779_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 347aa MW: 36387.7 Da PI: 7.1704

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC11779_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.4	4e-11	152	197	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq RrC11779_p1 152 HSIAERLRRERIAERMKGLQELVPNgN------KTDKASMLDEIIDYVKFLQ 197 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.29E-13	145	201	No hit	No description
SuperFamily	SSF47459	1.44E-16	145	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.984	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-15	149	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	152	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPSS DGFVDSRHQQ 60 ITMMPLSSHH QNEVVDGSSV HALYNGFSAG GSLPFHIPQG SAGGLMNQQG QALTQTQQPQ 120 VSASIATGRT AAAPPQSRTK VRARRGQATD PHSIAERLRR ERIAERMKGL QELVPNGNKT 180 DKASMLDEII DYVKFLQLQV KVLSMSRLGG GASVPSQISE EGGSHGNASS AVAGGNQATG 240 NSNDSLTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SRNPLIPGAA 300 GVGGRPSSPS LSGMTVQSTT KVKLNGNGVP EGLSSSAVKE AVFVSKP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MMNSSLLTPS SSSHVQTPAT TFDHEDFLDQ IFASSPWPSD EAHPPPPPSS DGFVDSRHQQ  60
ITMMPLSSHH QNEVVDGSSV HALYNGFSAG GSLPFHIPQG SAGGLMNQQG QALTQTQQPQ  120
VSASIATGRT AAAPPQSRTK VRARRGQATD PHSIAERLRR ERIAERMKGL QELVPNGNKT  180
DKASMLDEII DYVKFLQLQV KVLSMSRLGG GASVPSQISE EGGSHGNASS AVAGGNQATG  240
NSNDSLTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SRNPLIPGAA  300
GVGGRPSSPS LSGMTVQSTT KVKLNGNGVP EGLSSSAVKE AVFVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	156	161	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438414.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-176	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A397Y2S9	0.0	A0A397Y2S9_BRACM; Uncharacterized protein
STRING	Bo8g099910.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-155	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]