PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008944
Common NameRCOM_1613050
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 324aa    MW: 34218.1 Da    PI: 10.23
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008944genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.22.5e-3763165294
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..........eaesssssasnsss 87 
                    ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++          ++++ss+ ++ +s 
  30174.m008944  63 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvngtlkiptTSNTSSEPNDPNSV 158
                    5899************************************************************88888333222223332111111222222222 PP

            TCP  88 gkaaksa 94 
                    +k+ ++ 
  30174.m008944 159 KKKLSAP 165
                    2333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3068151IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14169123IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MATFHKKELD EDDDRNNNAA SPTKSVTPKE EPELEDASPA PLGVMPVAVH VPAAIRMPLT  60
TVPPKRASTK DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR WLLEHAEPAI  120
IAATGTGTVP AIAMSVNGTL KIPTTSNTSS EPNDPNSVKK KLSAPLAPIT TQQPQAVAVP  180
QQAVVPQGLV PMWAIPSNAV VPGAFFMVPP MAAAGPSNQP QIFAFQAAAT PLVNISARPI  240
SSFVSSMQQA ANIAVAVPVS GSSAVSTSKP AKATSVMAPT SSSAPISSNT TTSTTTTTTQ  300
MLRDFSLEIY DKQELQFMTR SSKH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582875.20.0LOW QUALITY PROTEIN: transcription factor TCP9
SwissprotO646473e-86TCP9_ARATH; Transcription factor TCP9
TrEMBLB9RDI60.0B9RDI6_RICCO; Uncharacterized protein
STRINGXP_002511775.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-76TCP family protein