PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30146.m003524 | ||||||||
Common Name | LOC8273796, RCOM_1491210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 338aa MW: 37203 Da PI: 6.6972 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.1 | 4.4e-17 | 233 | 267 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l 30146.m003524 233 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 267 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 2.7E-79 | 19 | 319 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 7.1E-16 | 227 | 277 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.319 | 227 | 263 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.0E-13 | 231 | 265 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.71E-13 | 231 | 290 | No hit | No description |
CDD | cd00202 | 1.43E-12 | 232 | 279 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 233 | 258 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.3E-15 | 233 | 267 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 338 aa Download sequence Send to blast |
MEAPEFFIGG YYSGGAASTA AEFLPEKRMS DQKNGDHFAV DDLLDFPNDD DAAAAALMND 60 GFFDNITSKN CTTTTDNSST TFTSNDSSNS SISGKHFGYQ SFADSYFSSE LCVPYDDLAE 120 LEWLSNFVED SFSTEQNLQV NNFHILSGSK PPTPASSSSE SHPEPSSARN PNNPMFQPET 180 PLPGKARSKR SRAAPCDWST RLLHLSSPTT KVSSKKQGNV DMNSGMDAPV RKCLHCAAEK 240 TPQWRTGPMG PKTLCNACGV RYKSGRLVAE YRPAASPTFV SAKHSNSHRK VLELRRQKEL 300 QRAQQEQYLH QSSIFGVTNG GDDFLIHHHS GPNFRHMI |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00048 | PBM | Transfer from AT4G32890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30146.m003524 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002515981.1 | 0.0 | GATA transcription factor 9 | ||||
Swissprot | O82632 | 8e-82 | GATA9_ARATH; GATA transcription factor 9 | ||||
TrEMBL | B9RQG2 | 0.0 | B9RQG2_RICCO; GATA transcription factor | ||||
STRING | XP_002515981.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1364 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25830.1 | 4e-73 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30146.m003524 |
Entrez Gene | 8273796 |
Publications ? help Back to Top | |||
---|---|---|---|
|