PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29983.m003147
Common NameLOC8269141, RCOM_1173260
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 211aa    MW: 22995.6 Da    PI: 9.0052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29983.m003147genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-202171256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g+
  29983.m003147 21 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDKAAREFRGA 71
                   69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-332178IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-232179IPR016177DNA-binding domain
PfamPF008474.9E-142170IPR001471AP2/ERF domain
CDDcd000185.25E-312178No hitNo description
SMARTSM003803.1E-382184IPR001471AP2/ERF domain
PROSITE profilePS5103224.1182178IPR001471AP2/ERF domain
PRINTSPR003671.3E-112233IPR001471AP2/ERF domain
PRINTSPR003671.3E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAPKDKKASP TSGITDKKEM HYRGVRKRPW GRYAAEIRDP GKKSRVWLGT FDTAEEAARA  60
YDKAAREFRG AKAKTNFPLP TDEISASKKA VNCSDVVDNP SPSQSSTVES SSPPAAREIT  120
RGAGGVVGRF PFVYQQQQQS VVGPVWFFDG TSLVRPEFVT QRFPVRFEPV GAEFGDGFVS  180
GGTQSDSDSS SVVDGKPARE FDLNFPPPED A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-231882267ATERF1
3gcc_A4e-231882267ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29983.m003147
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002517871.11e-151ethylene-responsive transcription factor 4
TrEMBLB9RVV21e-150B9RVV2_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002517871.11e-151(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.13e-35erf domain protein 9