PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29737.m001209
Common NameLOC8282500, RCOM_0700090
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 474aa    MW: 49715.2 Da    PI: 6.9028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29737.m001209genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12267312555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  29737.m001209 267 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 312
                    99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.59E-13260316No hitNo description
SuperFamilySSF474595.89E-17260322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16264321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9267312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MQPCSREMQG INTLLNQSST ATTTSTSQIP IHHNHHHHHH QDLQNQQIQN PHFDPSPSSN  60
DDFLEQMLST LPSCSWADLK SPWDLTTTAN LNLPKPRDLS DETPPSLPDS NNNVGFHNFD  120
ESVLLASKLR QHQISGGGGG GGPSPAAAAA AAKLMLQQQL MMAAAARGGL GQNDVLDGFK  180
SPNQGGDGSV QGLYNGFGTG SMHGTGQSSN QHFHHPQGGA AAMQAQNFGS PGGAMMNQPQ  240
ASGSTGGAPA QPRQRVRARR GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM  300
LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVADISSEG GGDCIQANAN GAAGNGSLPR  360
ANNSSQTPSS NDSLTVTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTATCHNR  420
NTTTNSLLNP SRLLQSNGEG PSSPSMSVLT VQSATLGNGG LDPSVKDAAS VSKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29737.m001209
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4442221e-71DQ444222.1 Nicotiana plumbaginifolia Joka8 mRNA, partial cds.
GenBankKF8364321e-71KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523493.10.0transcription factor bHLH66
SwissprotQ9ZUG92e-88BH066_ARATH; Transcription factor bHLH66
TrEMBLB9SBX40.0B9SBX4_RICCO; Uncharacterized protein
STRINGXP_002523493.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.17e-59LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]