PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29677.m000183
Common NameRCOM_0605170
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB_related
Protein Properties Length: 463aa    MW: 51341.5 Da    PI: 6.9974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29677.m000183genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151660147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE+ ++++a k++G g W++I   +g ++++ q++s+ qk+
    29677.m000183 16 REKWTEEEHYKFLEALKLYGRG-WRKIQGFIG-TKSAVQIRSHAQKF 60
                     789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.68E-151064IPR009057Homeodomain-like
PROSITE profilePS5129417.8441165IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.3E-81363IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-141463IPR006447Myb domain, plants
SMARTSM007174.1E-111563IPR001005SANT/Myb domain
PfamPF002494.9E-131659IPR001005SANT/Myb domain
CDDcd001679.87E-101861No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAAHQVRKPY TITKQREKWT EEEHYKFLEA LKLYGRGWRK IQGFIGTKSA VQIRSHAQKF  60
FSKVVRESNG GGAESSVKTI EIPPPRPKRK PMHPYPRKSV EGMLVSNQLE RSPSPNLSVS  120
EEENQSPNSV LSPLGFSDSL GSSSISEQHN GSSCATDMYS ATLLPIQKQE HSSSTEHHNG  180
SSPLLQFSSA PFEDNCLSKL ELDPMDVVCT EGDAATIVPF TSIKLFGRTV SVTHSPKQCL  240
EDSENLLSVT YKISEDDPDI GNDKGVQTLT RKQLDTQLSL GIGTAANCNS LPFSTTPVHQ  300
VLEQQGDNVN CLQSSPPLPW AVFQDLPFSF LDSCGQSSHG DPRNCCVEER SKEKDIHDER  360
SCSGLNTGSA SDVEHHCQSL SANGRARLHK RTNGFVPYKR CLAERDLSSS SILSEKHEQQ  420
RARLISLEVA AYFAKYKMLQ DTGDDAFKYL IAHSSFMPTI LHR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29677.m000183
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579106.10.0protein REVEILLE 7
TrEMBLB9SJV20.0B9SJV2_RICCO; Uncharacterized protein
STRINGXP_002526271.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.15e-37MYB_related family protein