PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G207000.1
Common NamePHAVU_009G207000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 472aa    MW: 50008.2 Da    PI: 6.5499
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G207000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.7e-12255300555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Phvul.009G207000.1 255 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 300
                         99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.54E-13248304No hitNo description
SuperFamilySSF474595.76E-17248310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16252309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9255300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MQPCSREMQG INALFNSSQI SLQDLHTTTN QIQNSHMNNH HHHQQPPLQH QLPHFDPTSQ  60
DDFLDQMFSS WPDLNPNKPL WDPNNLSDQT TPSNNDNNNN NTNNNVAFPY DEPSTLASKF  120
RDHQISASTT KDAAAALIIQ HQLLMSRDSR LLHMPLSLPQ NDVVDASSFK SPNPGGDTSV  180
QALYNGFAGS LHGAGQASNQ AQHFQHPQGS SNPIQGQNFG APGAGAATNQ APASGAPAQP  240
RQRVRARRGQ ATDPHSIAER LRRERIAERM KALQELVPNA NKTDKASMLD EIIDYVKFLQ  300
LQVKVLSMSR LGGAAAVAPL VADMSSEGGG DCIQANGGVA LAPNSNSNHN QTTASASNDS  360
LTMTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHTRNPL ISAASGSTQT  420
PTNAAPGTHA NPAVASNGEG PSSPSMSVLT VQSAVVGNDG AVKDAASVSK P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G207000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-159AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138416.10.0hypothetical protein PHAVU_009G207000g
SwissprotQ9ZUG96e-92BH066_ARATH; Transcription factor bHLH66
TrEMBLV7AYL90.0V7AYL9_PHAVU; Uncharacterized protein
STRINGXP_007138416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-64LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]