PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G012000.1 | ||||||||
Common Name | PHAVU_004G012000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 242aa MW: 27694.7 Da PI: 8.1387 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.7e-17 | 44 | 91 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Phvul.004G012000.1 44 KGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYL 91 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 97 | 140 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ TteE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Phvul.004G012000.1 97 RGNITTEEQLLIFELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 140 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 37 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.282 | 39 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-29 | 41 | 138 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-13 | 43 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 44 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-9 | 46 | 91 | No hit | No description |
PROSITE profile | PS51294 | 23.689 | 92 | 146 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-24 | 95 | 147 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-15 | 96 | 144 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 97 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.81E-12 | 101 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MISTSSSSSS FSSSSFSLSY VHMYKIMDKK PCNSSSSHDP EVRKGPWTME EDLILINYIA 60 NHGEGVWNSL AKASGLKRTG KSCRLRWLNY LRPDVRRGNI TTEEQLLIFE LHAKWGNRWS 120 KIAKHLPGRT DNEIKNFWRT RIQKHMKQAE NSQQQGNNSN ISETNDHHHH QASSSTSLVS 180 NMALQIETYS APSYQENLES FPTQFPTITD QSSSCTNHNI NSNHNYWNIE DFWPMQLLNG 240 D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 39 | 146 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00324 | DAP | Transfer from AT3G01530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G012000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT089841 | 1e-149 | BT089841.1 Soybean clone JCVI-FLGm-2P22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151019.1 | 0.0 | hypothetical protein PHAVU_004G012000g | ||||
Swissprot | P81391 | 2e-92 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | V7C0W8 | 1e-179 | V7C0W8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151019.1 | 1e-180 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 3e-76 | myb domain protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G012000.1 |
Entrez Gene | 18631665 |
Publications ? help Back to Top | |||
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