PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG311300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 458aa    MW: 46102.8 Da    PI: 6.8505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG311300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12249294555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Pavir.2NG311300.1.p 249 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 294
                          99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.30E-13242298No hitNo description
SuperFamilySSF474595.5E-17242304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16246303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9249294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MQPTTREMQA MAAAGQISLD DLRAAGGVHD DFLDQMLGGL QPSAWPELAS AAGAKAPEGG  60
VEAEGMHQQQ QQQFGGGLYD ESALLASRLR QHQISGGGAE SAAAAKQMVL QQLADLRHGH  120
HMLLQGMGRS TVGGGGGDGG MLLPLSLGSG GSGGDVQALL KAAANSAGGE AATVFGGAFA  180
GSLQQQQQQH FQPHPQQQTA PLPGQGFGRG GGASGGASQP QAGASGGTAA AAPPRQRVRA  240
RRGQATDPHS IAERLRRERI AERMKALQEL VPNANKTDKA SMLDEIIDYV KFLQLQVKVL  300
SMSRLGGAAA VAPLVADMSS EGRGGAPPAA AGSDGLAATE QQVAKLMEED MGTAMQYLQG  360
KGLCLMPVSL ASAISSATCH MRPPGLGVAA AAHHMAAMRL PPGMNGAGAD PAAVPASPSM  420
SVLTAQSAMA NGAGGADGEG SHSQQQQPKD AASVSKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253258RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.127021e-156stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG311300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620760.0BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBankKJ7279380.0KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799597.10.0glycine, alanine and asparagine-rich protein-like
SwissprotQ9ZUG98e-79BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2T7ESB10.0A0A2T7ESB1_9POAL; Uncharacterized protein
STRINGPavir.Ba01914.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141937118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-48LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]