PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG490500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 170aa    MW: 19613 Da    PI: 8.9309
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG490500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.21.5e-1279132457
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                           +r rr+++NRe+ArrsR RK++++ eL   v  + + N++L ++l++    ++
  Pavir.1KG490500.1.p  79 ERRKRRMISNRESARRSRMRKQKQLSELWAQVVHMRSTNRQLLDQLNHVIRDCD 132
                          689****************************************99998877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-976132No hitNo description
SMARTSM003383.7E-1476140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.31278141IPR004827Basic-leucine zipper domain
PfamPF001701.1E-978131IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-1180129No hitNo description
CDDcd147024.64E-1681132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MYPAEIASVP YLSHASAASF KPHYHAATND FLFQYSNLLV PHPSYYQDVA HLVYEASLPV  60
GNKSNSEESD DYQRSLAEER RKRRMISNRE SARRSRMRKQ KQLSELWAQV VHMRSTNRQL  120
LDQLNHVIRD CDRVLHENSQ LRDEQTKLQK QLEKLPVETT GSGVMSPDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRKRRMISNRESARRSRMRKQK
29299RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBMTransfer from LOC_Os02g49560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG490500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953778.11e-117basic leucine zipper 8
TrEMBLA0A3L6RPG11e-117A0A3L6RPG1_PANMI; Basic leucine zipper 43
STRINGPavir.Ab03276.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.19e-27basic leucine-zipper 42