PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT3G30530.1 | ||||||||
Common Name | ATBZIP42, bZIP42 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 173aa MW: 20301.6 Da PI: 5.6533 | ||||||||
Description | basic leucine-zipper 42 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.5 | 1.9e-15 | 81 | 139 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++rr+++NRe+ArrsR RK+ ++eL v L eN++L ++l++l++ +k+ +e+ AT3G30530.1 81 RKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKLNNLSESHDKVLQEN 139 689*************************************************9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.7E-14 | 77 | 141 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.875 | 79 | 142 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.9E-11 | 79 | 133 | No hit | No description |
Pfam | PF00170 | 6.9E-14 | 81 | 139 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.81E-13 | 81 | 131 | No hit | No description |
CDD | cd14702 | 6.02E-20 | 82 | 133 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 84 | 99 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009046 | anatomy | flower | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQPQTDVFSL HNYLNSSILQ SPYPSNFPIS TPFPTNGQNP YLLYGFQSPT NNPQSMSLSS 60 NNSTSDEAEE QQTNNNIINE RKQRRMISNR ESARRSRMRK QRHLDELWSQ VMWLRIENHQ 120 LLDKLNNLSE SHDKVLQENA QLKEETFELK QVISDMQIQS PFSCFRDDII PIE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 100 | RRSRMRKQ |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 258306_at | 0.0 | ||||
Expression Atlas | AT3G30530 | - | ||||
AtGenExpress | AT3G30530 | - | ||||
ATTED-II | AT3G30530 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00389 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT3G30530.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT3G30530, AT5G49450, AT1G13600, AT1G75390 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT3G30530 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016878 | 0.0 | AB016878.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MQP15. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_189674.1 | 1e-124 | basic leucine-zipper 42 | ||||
Swissprot | Q9FMC2 | 1e-63 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | A0A384LDW0 | 1e-123 | A0A384LDW0_ARATH; BZIP42 | ||||
TrEMBL | Q9LW45 | 1e-123 | Q9LW45_ARATH; Basic leucine-zipper 42 | ||||
STRING | AT3G30530.1 | 1e-123 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3112 | 26 | 67 | Representative plant | OGRP3104 | 11 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT3G30530.1 |
Entrez Gene | 822767 |
iHOP | AT3G30530 |
wikigenes | AT3G30530 |