PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os02g49560.1
Common NameLOC107275625, Os02g0728001, OsJ_08237, OSNPB_020728001
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 170aa    MW: 19777 Da    PI: 8.2539
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os02g49560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.52.9e-1379137462
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        +r rr+++NRe+ArrsR RK++++ eL   v  L + N++L ++l++    +++++ e
  LOC_Os02g49560.1  79 ERRRRRMISNRESARRSRMRKQKQLSELWAQVVHLRSTNRQLLDQLNHVIRDCDRVTHE 137
                       6899*******************************************999999887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-1476140IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-1076132No hitNo description
PROSITE profilePS5021710.57678141IPR004827Basic-leucine zipper domain
PfamPF001707.8E-1078132IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.38E-1280129No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
CDDcd147023.98E-1585132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MYPAEIASFP YLSPASAVSF KTHYHVDTND FLLQYNSLLV PQATSYQHVA HLPHETNLPV  60
GNKSNSDESD DYQRSLAEER RRRRMISNRE SARRSRMRKQ KQLSELWAQV VHLRSTNRQL  120
LDQLNHVIRD CDRVTHENCQ LRDEQAKLQK QLEKTPVENT ESTFMGPDN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179100RRRRRMISNRESARRSRMRKQK
29299RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.147930.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3AAZ0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00647PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os02g49560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs02g49560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0052840.0AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624540.11e-124basic leucine zipper 43
TrEMBLA0A0D3FA031e-123A0A0D3FA03_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YXQ31e-123A0A0D9YXQ3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GCM51e-123A0A0E0GCM5_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NKF31e-123A0A0E0NKF3_ORYRU; Uncharacterized protein
TrEMBLA2X9661e-123A2X966_ORYSI; Uncharacterized protein
TrEMBLA3AAZ01e-123A3AAZ0_ORYSJ; Os02g0728001 protein
TrEMBLI1P3U71e-123I1P3U7_ORYGL; Uncharacterized protein
STRINGOGLUM02G31690.11e-124(Oryza glumipatula)
STRINGORUFI02G32700.11e-124(Oryza rufipogon)
STRINGOS02T0728001-001e-124(Oryza sativa)
STRINGONIVA02G34180.11e-124(Oryza nivara)
STRINGORGLA02G0265300.11e-124(Oryza glaberrima)
STRINGOBART02G31030.11e-124(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.16e-14basic leucine-zipper 43