PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.007G138100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 206aa MW: 23359.7 Da PI: 10.1888 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.1 | 1.9e-12 | 102 | 134 | 2 | 38 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 +y+GVr ++ +gr++AeIrdp gk+ r++lg+f+t Potri.007G138100.2 102 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDT 134 69*******.**********8...557*********9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-17 | 102 | 135 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-16 | 102 | 135 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-11 | 102 | 135 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-7 | 102 | 134 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-11 | 102 | 142 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.829 | 102 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 103 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-8 | 125 | 141 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MAATRLFVDR YSGTRQAEEW TRVHILMVAH RPPDPNLHFI FSGDYFLSSV YLRHWLLYCN 60 LRYILRLFSS LGFKKMAPKK LNGNDNGSLK KASGDHDKKE IHYRGVRKRP WGRYAAEIRD 120 PGKKSRVWLG TFDTAPPHVN AVGPVWFLDS TVKPEFVAQR FPVRYDPVGL EGGAHSDSDS 180 SSVIDFKPRS SILHLDLNLP PPADA* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Pth.12656 | 0.0 | bud| leaf |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00623 | PBM | Transfer from PK19363.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.007G138100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002310408.2 | 2e-37 | ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A3N7FDB1 | 4e-36 | A0A3N7FDB1_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01110.1 | 7e-37 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 4e-23 | erf domain protein 9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.007G138100.2 |