PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.005G071900.4 | ||||||||
Common Name | POPTR_0005s07290g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 291aa MW: 32662 Da PI: 4.3986 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.2 | 3.3e-19 | 21 | 74 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Potri.005G071900.4 21 KKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 74 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.5 | 6.8e-42 | 20 | 112 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ +++++++e+L +e+ Potri.005G071900.4 20 EKKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNFDAIQQDNEALLKEI 110 69*************************************************************************************9999 PP HD-ZIP_I/II 92 ke 93 +e Potri.005G071900.4 111 RE 112 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.92E-19 | 14 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-18 | 19 | 80 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-16 | 21 | 77 | No hit | No description |
Pfam | PF00046 | 1.8E-16 | 21 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 23 | 83 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.7E-6 | 47 | 56 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.7E-6 | 56 | 72 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.3E-19 | 76 | 117 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MLNGLDEEGC VEESGGHVTE KKRRLSGDQV KALEKNFEVE NKLEPERKVK LAQELGLQPR 60 QVAVWFQNRR ARWKTKQLER DYGVLKANYD SLKHNFDAIQ QDNEALLKEI RELKAKLNEE 120 NTESNVSVKE EIILAESEDK VTEEDTPPLL DSLTASAEAK ELNYENFNSS SSINNGLGAS 180 LFPDFKDGLS DSDSSAILNE DNSPNPAISS SGILQSQLMM SPPPSSSLKF NCSTSSSSPS 240 TMNSFQFSKT YQTQFVKLEE HNFLSSEEAC NFFSDEQPPT LHWYCSDQWN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9592 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed with a lower level in siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00271 | DAP | Transfer from AT2G22430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.005G071900.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147945 | 0.0 | EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306291.2 | 0.0 | homeobox-leucine zipper protein ATHB-6 isoform X1 | ||||
Refseq | XP_024457294.1 | 0.0 | homeobox-leucine zipper protein ATHB-6 isoform X2 | ||||
Swissprot | Q940J1 | 6e-75 | ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16 | ||||
TrEMBL | A0A2K2ACU4 | 0.0 | A0A2K2ACU4_POPTR; Uncharacterized protein | ||||
TrEMBL | A0A2K2ACW6 | 0.0 | A0A2K2ACW6_POPTR; Uncharacterized protein | ||||
TrEMBL | B9H4Q5 | 0.0 | B9H4Q5_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0005s07290.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 4e-73 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Potri.005G071900.4 |
Entrez Gene | 7479180 |
Publications ? help Back to Top | |||
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