PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.002G198100.1
Common NamePOPTR_0002s19920g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 374aa    MW: 41407.1 Da    PI: 5.1117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.002G198100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +grWT+eEde+l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  Potri.002G198100.1 14 KGRWTAEEDEKLAKYIQANGEGSWRSMPKNAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
2Myb_DNA-binding56.18.5e-1867112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg+ +teE+e++v++++ lG++ W++Ia++++ gRt++++k++w+++l
  Potri.002G198100.1  67 RGNISTEEEEIIVQLHASLGNR-WSLIASYLP-GRTDNEIKNYWNSHL 112
                         7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.556961IPR017930Myb domain
SuperFamilySSF466892.31E-2811108IPR009057Homeodomain-like
SMARTSM007173.0E-121363IPR001005SANT/Myb domain
PfamPF002493.6E-151461IPR001005SANT/Myb domain
CDDcd001673.90E-91661No hitNo description
PROSITE profilePS5129425.46262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2465116IPR009057Homeodomain-like
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.9E-1567112IPR001005SANT/Myb domain
CDDcd001672.23E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEKLAKYIQ ANGEGSWRSM PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI STEEEEIIVQ LHASLGNRWS LIASYLPGRT DNEIKNYWNS HLSRRIHSFR  120
RSASESLPLI TETAKEGVLT KGKGGRAGRF AVKKNKNSHT PKDATRASTK KPLMENNTSN  180
CHNSNIEVMQ LLQTPAIEKE TLSSAINDTV IWDPCEDDKE QMDLVMPSPY PETGRGMVGS  240
KNDSSGPFYQ GIENTLCFDE VTDKELLDPN GGSTLNEERQ DGLVVRSEER ENGVLSPNKT  300
VYDSIGYLSS NGESGEWHSC SSISISGFDD WIWDDVMGGH VEGGGDHLIQ EDNMLSCLWE  360
SDQVEWGGGG TGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-25121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-251211625128MYB TRANSFORMING PROTEIN
1mse_C6e-25121162105C-Myb DNA-Binding Domain
1msf_C6e-25121162105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.002G198100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024450981.10.0transcription factor MYB63
TrEMBLB9GSG50.0B9GSG5_POPTR; Uncharacterized protein
STRINGPOPTR_0002s19920.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-71myb domain protein 111