PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_111.g399.t1
Organism
Picochlorum sp. SENEW3
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family WRKY
Protein Properties Length: 745aa    MW: 80972.5 Da    PI: 6.7703
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_111.g399.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.2e-25210268259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEE.S--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYe.geHnhe 59 
                                           dDgynWrKYG K+vkgs++prsYY+C+++gC++kk ver+   + + ++  + geHnh+
  model.Picochlorum_contig_111.g399.t1 210 DDGYNWRKYGEKNVKGSKYPRSYYKCSTPGCTMKKVVERDPVSGIISNTLLKgGEHNHP 268
                                           8******************************************999999887369***7 PP
2WRKY98.54.3e-31535592259
                                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                           +Dgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver++++  v+++tYeg+H+h+
  model.Picochlorum_contig_111.g399.t1 535 EDGYKWRKYGQKVVKGNPHPRSYYKCTSTGCRVRKQVERCSDNVGVLITTYEGKHTHD 592
                                           8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.297204270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-22206270IPR003657WRKY domain
SuperFamilySSF1182903.53E-20206270IPR003657WRKY domain
SMARTSM007741.3E-24209269IPR003657WRKY domain
PfamPF031066.9E-19210268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-32521594IPR003657WRKY domain
SuperFamilySSF1182906.28E-28527594IPR003657WRKY domain
PROSITE profilePS5081132.765529594IPR003657WRKY domain
SMARTSM007743.8E-37534593IPR003657WRKY domain
PfamPF031064.7E-25535592IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009555Biological Processpollen development
GO:0009651Biological Processresponse to salt stress
GO:0009942Biological Processlongitudinal axis specification
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0030010Biological Processestablishment of cell polarity
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MVEIGCITLE PDFAFLHTHS LIKNTLMEIK QKEEGEEVQD VGHALVDEGT RHAVMGTGGA  60
DAPMKEGLKE GDGIKNDSVS KGDEMLAQIR SGVKPPAESP VLLPIMRNAL SEFSPTGTSL  120
LSKSGGGDAY AQTYFTEAQA IIAAQIAARA AADVGLCYPW NFTQGQMMPP QAGVISEADR  180
RRSSSVAESD TADAITPGDG GLQVSMAAND DGYNWRKYGE KNVKGSKYPR SYYKCSTPGC  240
TMKKVVERDP VSGIISNTLL KGGEHNHPRP NAARVDVSAF VQSATQAPRY THDDTPSKPT  300
QKRKRVSIQS SGDGSERLDA TRVMEPEDSK RHGEQSQDHT DPTTSITDKV HSKEDMKESA  360
VMALQLLGTG FSPDIPSLGP GMSGTPTNLL PLPATLRSSP LIAKTKNGTK SHTLYTVYSS  420
PNHQAPSDLL DHGEVNSEDE WEMAEEDFGT EDNETVNAAI AAAAAYICRE LKNPSIDDTK  480
MKREDTMMIA AEADEKKAMP KKSASKAPRE KKTERKKHET SKTVIRTETD SDQIEDGYKW  540
RKYGQKVVKG NPHPRSYYKC TSTGCRVRKQ VERCSDNVGV LITTYEGKHT HDPPLMRNNN  600
TQSRVKMPGD QGYIADKNQV FSPALAPACF PMMSPASLMA SDSPNTFGHH FLSGSPSIHQ  660
DTPDHVPHSL GISSPAEQLQ LYSIQQAAAQ QKINAHLVQQ AKAWQEALAR SPAALQTFQM  720
LAQQQQQSPR GGSLDVTQSP NKNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-26198594477Probable WRKY transcription factor 4
2lex_A6e-26198594477Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-28WRKY DNA-binding protein 33