PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G260800.2.p | ||||||||
Common Name | PRUPE_ppa005254mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 456aa MW: 47613.5 Da PI: 6.9027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.3e-12 | 244 | 289 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Prupe.7G260800.2.p 244 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 289 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.27E-13 | 237 | 293 | No hit | No description |
SuperFamily | SSF47459 | 5.5E-17 | 237 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.39 | 239 | 288 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 241 | 298 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-9 | 244 | 289 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-13 | 245 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048767 | Biological Process | root hair elongation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MQPCSKEMQD MNSLLNSSPS SQLSLQDHHR HLQLQPQQQS HSHSHSHSRP HLHNSHSQMH 60 PQIPSPSPAH FDSASHDDFL EQMLSTLGPS SCSWADDTPP SNSDNVVFTY DDSANLATKF 120 RSQQISAGAG ASKSASTSAA AAAAMMLQHQ LMMSRSTSAD SGFVPMALSL GNGDFDRSNN 180 DVVEGSSSFK SPNPVGGSLQ AQNYGGPGAA MNQGPASGSG GGGGAPAQAR PRVRARRGQA 240 TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL 300 GGAAAVAPLV ADVSSEGGGD CIQASANGGT RGRSSNGNQT ASSSNDNSMT VTEHQVAKLM 360 EEDMGSAMQY LQGKGLCLMP ISLATAISTA TCHTRNPLIH NNNNNNNNNN NAVMASNGGE 420 GPSSPSMSVL TVQSATMGNG GVDGSVKDAT SVSKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 253 | RLRRER |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00659 | PBM | Transfer from Pp3c14_15890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G260800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 9e-32 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424137.1 | 0.0 | transcription factor bHLH69 isoform X2 | ||||
Swissprot | Q9ZUG9 | 9e-90 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A251NH58 | 0.0 | A0A251NH58_PRUPE; Uncharacterized protein | ||||
STRING | XP_008242964.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-61 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G260800.2.p |
Entrez Gene | 18770899 |
Publications ? help Back to Top | |||
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