PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G241000.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 455aa    MW: 49730.4 Da    PI: 7.5964
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G241000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-1659103147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         r +WT+eE+ ++++a k++G g W+ I +++g ++t+ q++s+ qk+
  Prupe.5G241000.1.p  59 REKWTEEEHHKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
                         789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129420.94654108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-956106IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-1657106IPR006447Myb domain, plants
SMARTSM007171.2E-1158106IPR001005SANT/Myb domain
PfamPF002492.1E-1459102IPR001005SANT/Myb domain
CDDcd001675.00E-1061104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MAVEDYSEAT GSNASVAAAD CSLKGDAQSK PVIELKELSS FGNDHTPKIR KPYTITKQRE  60
KWTEEEHHKF LEALKLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVSKE SSGPSEGSIT  120
PIEIPPPRPK RKPVHPYPRK SVDSLIGSPE RSPSPHFSVS GKGQESPTSV LSALGSDVLG  180
SAALDQPSRS ATPTSCTTDM RSTILSHVEK ENDYMTSNSS TEEVKESVPS VQLSADSTPE  240
KFACMKHGSG SNHIVSTEGD AGSPRASSSI KLFGRTVLVS DSERQSPPGS VTKDSKAKQE  300
NCQRENDKLA QTLRLDELDT RLSLGGIGEH QKQSPNSQKV NPDAPPPWWF MHNGLIPFFQ  360
VRSCNQNSVQ IHANSCADET MKEMETSLSH DGSVSAVEIL AEKHLEAADA LREETRSLPC  420
SSRKGFAPYK RCLADRNMNS SGEMRDRQRA RVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G241000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419512.10.0protein REVEILLE 7
TrEMBLA0A251PEQ00.0A0A251PEQ0_PRUPE; Uncharacterized protein
STRINGXP_008240374.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.16e-52MYB_related family protein