PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c4_20430V3.3.p
Common NamePpVNS3
Organism
Physcomitrella patens
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family NAC
Protein Properties Length: 359aa    MW: 41073.2 Da    PI: 7.6987
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c4_20430V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-5081411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka....eekewyfFskrdkkyatgkrknratksgyWkat 86 
                        +p+GfrFhP deelv +yL kkv ++k++l + i++vd+yk+ePwdL++  k+k+    +++++yfFs++dkky+tg+r+nrat +g+Wkat
  Pp3c4_20430V3.3.p   8 VPVGFRFHPMDEELVGYYLPKKVGDRKIDL-DLIQDVDLYKLEPWDLHEfcKIKNdpneKQTDYYFFSRKDKKYPTGNRSNRATLKGFWKAT 98 
                        599***************************.99**************85464444443355588**************************** PP

                NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        g+dk++++k +++l+g++ktLvfy+grap+g ktdW+mhe+rl
  Pp3c4_20430V3.3.p  99 GRDKPIYTKlGQTLIGMRKTLVFYQGRAPHGIKTDWIMHEFRL 141
                        ********988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-536162IPR003441NAC domain
PROSITE profilePS5100554.3278162IPR003441NAC domain
PfamPF023651.5E-249141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048759Biological Processxylem vessel member cell differentiation
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:1990110Biological Processcallus formation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MNQLAARVPV GFRFHPMDEE LVGYYLPKKV GDRKIDLDLI QDVDLYKLEP WDLHEFCKIK  60
NDPNEKQTDY YFFSRKDKKY PTGNRSNRAT LKGFWKATGR DKPIYTKLGQ TLIGMRKTLV  120
FYQGRAPHGI KTDWIMHEFR LDNGPDQPAH DGGWVICRVF KKNKNQKMKI QHEGAISHEE  180
HIGAILPEPV PRSDIPAGGG LLERSHHGVK QEIVNLDDYQ PQSNQREFGL SFNKDDSIHR  240
AIKLMKPDAA NINRFSSNND SNTGLWQIRH PQTSSSSDAT EPNDYETIGG TLYNIDWSAW  300
LQDPVQPGQG PEVLLRCPST TKISSDDVTS PLLQLKRQNS DNFSSLCFWN DTKDFQQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-42816715174Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00266DAPTransfer from AT2G18060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8980830.0AB898083.1 Physcomitrella patens PpVNS3 mRNA for NAC transcription factor PpVNS3, complete cds, ecotype: Gransden 2004.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373380.10.0NAC domain-containing protein 76-like
RefseqXP_024373381.10.0NAC domain-containing protein 76-like
RefseqXP_024373382.10.0NAC domain-containing protein 76-like
TrEMBLX5IHC20.0X5IHC2_PHYPA; NAC transcription factor PpVNS3
STRINGPP1S201_58V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.12e-72NAC domain containing protein 76
Publications ? help Back to Top
  1. Xu B, et al.
    Contribution of NAC transcription factors to plant adaptation to land.
    Science, 2014. 343(6178): p. 1505-8
    [PMID:24652936]