PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pp3c12_17450V3.9.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
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Family | MYB_related | ||||||||
Protein Properties | Length: 417aa MW: 44116.4 Da PI: 6.6831 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42 | 2.2e-13 | 44 | 88 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Pp3c12_17450V3.9.p 44 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 88 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-16 | 38 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.408 | 39 | 93 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 2.1E-18 | 42 | 91 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-6 | 42 | 94 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 43 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-11 | 44 | 88 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.27E-8 | 46 | 89 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MNAASVEMLG VMVAGSTVPG IPSVSVSEEG SKKIRKPYTI TKSRESWTEQ EHDKFLEALQ 60 LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL KVQKNGTGEH VPPPRPKRKS AQPYPQKAPK 120 CVPAQVQVSD GLNAQAVQAE SSYGTGSHVP PMSSASPSVS AWVQHSVSPN PSISYDAPGI 180 KSEVEGVSLT AVRASSNSIS GSSPGGWPQH VLPASQIAPE SCIRAAPDFT EVYKFIGSVF 240 DPGVSGHLRK LKEMSPIDRE TVLLLMRNLS INLASPDFEE HDTGEDTSSV SGQAGTPQSN 300 ALLVSPRSGD ADHTQQRASL LLAYSDNTAD AGTPRRHSYD GGGAISASYT SSGVSPSPGD 360 LEPVSLGPPS AALQPQIPVL TMKPERVYSA PSLPSLTSLP SLPAGLVDGS VDTWWT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppa.14160 | 1e-163 | gametophore| protonema |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024389910.1 | 0.0 | protein REVEILLE 3-like isoform X5 | ||||
Swissprot | Q6R0H0 | 5e-86 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A2K1KLY0 | 0.0 | A0A2K1KLY0_PHYPA; Uncharacterized protein | ||||
STRING | PP1S160_6V6.1 | 0.0 | (Physcomitrella patens) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 1e-81 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Pp3c12_17450V3.9.p |
Publications ? help Back to Top | |||
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