PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G01520.1 | ||||||||
Common Name | ASG4, F22L4.18, LCL3, RVE3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 32795.5 Da PI: 10.1809 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44 | 5.2e-14 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky AT1G01520.1 61 RENWTEQEHDKFLEALHLFDRD-WKKIKAFVG-SKTVIQIRSHAQKY 105 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-16 | 55 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.616 | 56 | 110 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-7 | 59 | 111 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-17 | 59 | 108 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.7E-11 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-12 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.61E-9 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MVTVNPSQAH CLPMKMSLPG FNTLPHTATT IPVSIRSNRT MSFFEDPTKK VRKPYTITKS 60 RENWTEQEHD KFLEALHLFD RDWKKIKAFV GSKTVIQIRS HAQKYFLKVQ KNGTKEHLPP 120 PRPKRKANHP YPQKAPKFTL SSSNALFQHD YLYNTNSHPV ISTTRKHGLV HCDVSIPSSV 180 IKEEFGVSEN CCSTSSSRDK QRTRIVTETN DQESCGKPHR VAPNFAEVYN FIGSVFDPKT 240 TGHVKRLKEM DPINLETVLL LMKNLSVNLT SPEFDEQRKL ISSYNAS |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18378849 | 0.0 | ||||
Genevisible | 259432_at | 0.0 | ||||
Expression Atlas | AT1G01520 | - | ||||
AtGenExpress | AT1G01520 | - | ||||
ATTED-II | AT1G01520 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G01520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q6R0H0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G01520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ937211 | 0.0 | AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene). | |||
GenBank | AY519508 | 0.0 | AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds. | |||
GenBank | BT029347 | 0.0 | BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_171659.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | Q6R0H0 | 0.0 | RVE3_ARATH; Protein REVEILLE 3 | ||||
TrEMBL | A0A178W672 | 0.0 | A0A178W672_ARATH; ASG4 | ||||
STRING | AT1G01520.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 | Representative plant | OGRP928 | 15 | 58 |
Link Out ? help Back to Top | |
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Phytozome | AT1G01520.1 |
Entrez Gene | 839337 |
iHOP | AT1G01520 |
wikigenes | AT1G01520 |