PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02532.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 307aa    MW: 33843 Da    PI: 9.2878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02532.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-124387147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++++a +++  + Wk+I + +g  +t  q++s+ qky
        PK02532.1 43 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 87
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.99E-163793IPR009057Homeodomain-like
PROSITE profilePS5129414.183892IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-64193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-184190IPR006447Myb domain, plants
SMARTSM007176.5E-104290IPR001005SANT/Myb domain
PfamPF002494.4E-104387IPR001005SANT/Myb domain
CDDcd001671.13E-74588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALPGLGPFT AAVTATTTTT STTSSSEDLS KKIRKPYTIT KSRESWTEPE HDKFLEALQL  60
FDRDWKKIEA FVGSKTVIQI RSHAQKYFLK VQKNGTSEHL PPPRPKRKAA HPYPQKASKN  120
SQAPPAPVQV SGAFQSSSAL HEPGYIQIPD PSLRSPLAGA SISSWNNNSP QAVNLSNETK  180
APSAANNCCS STESTPRARP IVETTDLGNH GHQLRVLPDF AQVYSFIGSV FDPNTTGHVQ  240
KLKKMDQIDV ETVLLLMRNL SINLTSPDFE DHRKLLSSYE IEPDTTNQSD AIRPFNDDQP  300
KNVAKIV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBM25215497Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027536.10.0protein REVEILLE 6 isoform X1
SwissprotQ8H0W31e-122RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2P5FGQ11e-180A0A2P5FGQ1_TREOI; GAMYB transcription factor
STRINGEMJ198901e-154(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-107MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]