PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228252.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 317aa    MW: 34488.9 Da    PI: 9.9307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228252.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.9e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +v+++G+g Wk I +         +R+  ++k++w+++
   XP_008228252.1  5 KQKWTAEEEEGLLAGVAKHGPGKWKNILKDPEfssvlIHRSNIDLKDKWRNL 56
                     79**********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.131161IPR017930Myb domain
SuperFamilySSF466891.44E-15258IPR009057Homeodomain-like
SMARTSM007172.6E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-14456IPR009057Homeodomain-like
PfamPF002498.0E-9556IPR001005SANT/Myb domain
CDDcd116601.78E-21656No hitNo description
PROSITE profilePS5150418.927151221IPR005818Linker histone H1/H5, domain H15
SMARTSM005262.1E-11151216IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.94E-13152231IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-11152228IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.4E-8154216IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEGLLAGV AKHGPGKWKN ILKDPEFSSV LIHRSNIDLK DKWRNLSVST  60
SGHGSKDRQR GTKVKNSVAA QHLVQNSAPI ASVRPNASPA SAPPNSSPAS VRPSASPASV  120
RPSASPASVC PNASPDAMMD DAVNSAPELK SASQYDPMIF QALSTMKDMN GSDLGAILNF  180
IEQRHEVPVP LNFRRLLGPR LRRLVSQGKL EKVQNGYKLK KDATFGTKTP TPTRNQRDVR  240
PRKLQNSGSM TFTETVQDAA ETAAHKLADA EDKSFVASVA MKEADRISKM TEDNESILQL  300
IEEIYERCSH GEVVALA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228251.10.0PREDICTED: telomere repeat-binding factor 4-like
RefseqXP_008228252.10.0PREDICTED: telomere repeat-binding factor 4-like
TrEMBLA0A251PYE70.0A0A251PYE7_PRUPE; Uncharacterized protein
STRINGXP_008228251.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.13e-57MYB_related family protein