PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G72740.1
Common NameF28P22.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 287aa    MW: 31882.4 Da    PI: 8.4715
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G72740.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.4e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l+ +++++G+g Wk I r         +R+  ++k++w+++
      AT1G72740.1  5 KLKWTAEEEEALLAGIRKHGPGKWKNILRDPEfadqlIHRSNIDLKDKWRNL 56
                     689*********************************999***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.177162IPR017930Myb domain
SuperFamilySSF466896.17E-16363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-13456IPR009057Homeodomain-like
SMARTSM007171.3E-8459IPR001005SANT/Myb domain
PfamPF002493.2E-8556IPR001005SANT/Myb domain
CDDcd116602.98E-20756No hitNo description
SMARTSM005267.6E-16117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.01E-12117205IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.9E-9118181IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.56119193IPR005818Linker histone H1/H5, domain H15
PfamPF005381.3E-6121190IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGNQKLKWTA EEEEALLAGI RKHGPGKWKN ILRDPEFADQ LIHRSNIDLK DKWRNLSVPP  60
GTQSLTNKAR PAKVKEEGDT PAADANDAVT IPRPIPTIPP PPGRRTLPSE LIPDENTKNA  120
PRYDGVIFEA LSALADGNGS DVSSIYHFIE PRHEVPPNFR RILSTRLRRL AAQSKLEKVS  180
TFKSIQNFYK IPDPSGTKIG VPKPKETHTK LRQANNQTSA DSQQMIEEAA ITAACKVVEA  240
ENKIDVAKLA AEEFEKMTKI AEENRKLLVI ATEMHELCSC GETMLLA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.191270.0flower| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO139371420.0
Genevisible259924_at0.0
Expression AtlasAT1G72740-
AtGenExpressAT1G72740-
ATTED-IIAT1G72740-
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G72740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G72740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3729250.0AF372925.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
GenBankAY1248490.0AY124849.1 Arabidopsis thaliana At1g72740/F28P22_7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177418.20.0Homeodomain-like/winged-helix DNA-binding family protein
SwissprotF4IEY40.0TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLA0A178WDM50.0A0A178WDM5_ARATH; Uncharacterized protein
TrEMBLF4IEY30.0F4IEY3_ARATH; Homeodomain-like/winged-helix DNA-binding family protein
STRINGAT1G72740.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Representative plantOGRP8551659
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Ma L, et al.
    Genomic evidence for COP1 as a repressor of light-regulated gene expression and development in Arabidopsis.
    Plant Cell, 2002. 14(10): p. 2383-98
    [PMID:12368493]
  3. Marian CO, et al.
    The maize Single myb histone 1 gene, Smh1, belongs to a novel gene family and encodes a protein that binds telomere DNA repeats in vitro.
    Plant Physiol., 2003. 133(3): p. 1336-50
    [PMID:14576282]
  4. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  5. Wierzbicki AT,Jerzmanowski A
    Suppression of histone H1 genes in Arabidopsis results in heritable developmental defects and stochastic changes in DNA methylation.
    Genetics, 2005. 169(2): p. 997-1008
    [PMID:15489532]
  6. Koroleva OA,Tomlinson ML,Leader D,Shaw P,Doonan JH
    High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions.
    Plant J., 2005. 41(1): p. 162-74
    [PMID:15610358]
  7. Yanhui C, et al.
    The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family.
    Plant Mol. Biol., 2006. 60(1): p. 107-24
    [PMID:16463103]
  8. Panjabi P, et al.
    Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes.
    BMC Genomics, 2008. 9: p. 113
    [PMID:18315867]
  9. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  10. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]