PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00041173-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 653aa    MW: 69506.2 Da    PI: 8.5935
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00041173-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11412457555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er RR+ri +++  L+el+P++      K +Ka++L + ++Y+k Lq
  PSME_00041173-RA 412 HSIAERLRRERIAERMKALQELVPNS-----NKTDKASMLDEIIDYVKFLQ 457
                       99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17405466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.453407456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16409466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.81E-13411461No hitNo description
PfamPF000107.7E-9412457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-14413462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
FNIKRKHQLS TPIIFISCQA ASECKSFKIS KEAAGVESRD CAILRRGRIS SRQDILASLV  60
NFLVDMQPST SLLGTGPVQS VSSVTSCLSS SPEVALQEQM HSQQQQINSQ QQHFSSQFDQ  120
TNQPHQNMED FLEQMFLMPS WSDVGVKTAP WEFNPANASQ GNNASNNNNS PQNLQSNTQR  180
LFTMSLLPSG IGGQGLNSQE NEGHAGEHMQ YSNYDESQFL ASRLRQHPLS GNSSMNQTPN  240
QVSQGINETN TSPGRSMVLQ LSTGNATASQ LLASMGNSPR GTAVMTRSPS TGGSCNGSDG  300
GMLPLPLSLG QAGKSGEMNE TRSRDEIEAS FKSANNARDS NLGGLFPPFA GSPRGVRPPG  360
QNFHPQSGQV PMQGYGGMPQ PQHQNPPPTG VGAAPPVRPR VRARRGQATD PHSIAERLRR  420
ERIAERMKAL QELVPNSNKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AGAVAPLVAD  480
IPAEGANAPQ GTRTNGSQSS SPDGLALTER QVAKLMEEDM GTAMQYLQGK GLCLMPISLA  540
SAINSSGSRP HPPSTPSLQG LLASNANDRQ VLESSNSSLS ALTSASMTIQ PSISSPGSGI  600
TEQGDNAHKA GNGTRNPKDS REANSVTKSN GIGSALSKNT VKGEDEPQRR TGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416421RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150430.0BT115043.1 Picea glauca clone GQ03607_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLU5DE195e-99U5DE19_AMBTC; Uncharacterized protein
STRINGERN186531e-100(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-45LJRHL1-like 1