PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021297-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family Trihelix
Protein Properties Length: 432aa    MW: 48917.1 Da    PI: 5.4447
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021297-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix513.8e-16100192186
          trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                       +W++++ ++Li+++ ++ e+ + ++           +kk++W++vsk+m+ +g+      C++k+++lnkryk+++++ +++ +++++++ ++
  PSME_00021297-RA 100 KWSDSMMRLLITMVLYVSEDGGLECedgsknksgilQKKGKWKSVSKVMMGKGC-----YCEDKFNDLNKRYKRLNDILGRGiACRVVENPSL 187
                       7*******************9976666778889999*****************9.....5**********************89********* PP

          trihelix  82 fdqle 86 
                       +d++e
  PSME_00021297-RA 188 LDSME 192
                       ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.2E-1298218No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MQMDFHATAI KDSRAASMIC VTFFSAISCG IHEIDLQLAK VALTGVGQSS VIPSGSQKVK  60
HTIIWQGRLD GQSSTLDCVV SLKDPLWQEE LRQDPWQRMK WSDSMMRLLI TMVLYVSEDG  120
GLECEDGSKN KSGILQKKGK WKSVSKVMMG KGCYCEDKFN DLNKRYKRLN DILGRGIACR  180
VVENPSLLDS MEHLSPKVKE DVRKILSSKH LFFKEMCSYH NGTGVHFPAN LDVQQCLQSS  240
MTAKGRDGHE ACRMAKEENE GDEEDEENED GDDEDIEDTN DENGEDADAE GVGNYSKRRK  300
TPRNAEEAQA LELEKQRFKW EKFCSKKSRE LERMKLENER TKLENGPVPV LPKWASPHRS  360
GAKFSHSSRL SESKTYYQAR ECEDCCPPRR EEANFAIAGE PARGEKTAAW EMPEPLSAYE  420
GEFFSICQRE GP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAPTransfer from AT1G76870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1044561e-156BT104456.1 Picea glauca clone GQ02810_J16 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107064.12e-80uncharacterized protein LOC109723194
TrEMBLA0A1U7YP043e-77A0A1U7YP04_NELNU; uncharacterized protein LOC104586241
STRINGXP_010241711.16e-78(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.15e-56sequence-specific DNA binding transcription factors