PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT1G76870.1
Common NameF7O12.4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Trihelix
Protein Properties Length: 385aa    MW: 44957.2 Da    PI: 7.0675
Description
Gene Model
Gene Model ID Type Source Coding Sequence
AT1G76870.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.72.3e-2687178186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                  +W++++v+++i+a ++++e+++++k     +kk++W++vsk+m erg+++sp+qC++k+++lnkrykk++e+ +++ ++e++++ +++d+++
  AT1G76870.1  87 KWMDKMVKLMITALSYIGEDSGSDKkfavlQKKGKWRSVSKVMDERGYHVSPQQCEDKFNDLNKRYKKLNEMLGRGtSCEVVENPSLLDKID 178
                  7*********************98778888**********************************************669*******999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-2185204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0003674Molecular Functionmolecular_function
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEGNCSQGRF DSQVSSMRDL RPNAINQNQK QHHPNSRQDS GFNNTMDTRH NNVDRGKKSM  60
SEDDELCLLS SDGQNKSKEN SPWQRVKWMD KMVKLMITAL SYIGEDSGSD KKFAVLQKKG  120
KWRSVSKVMD ERGYHVSPQQ CEDKFNDLNK RYKKLNEMLG RGTSCEVVEN PSLLDKIDYL  180
NEKEKDEVRR IMSSKHLFYE EMCSYHNGNR LHLPHDPAVQ RSLHLITLGS RDDHDNDEHG  240
KHQNEDLDDD DDYEEDHDGA LSDRPLKRLR QSQSHEDVGH PNKGYDVPCL PRSQADVNRG  300
ISLDSRKAAG LQRQQIESKS LELEGRKLQI QAEMMELERQ QFKWEVFSKR REQKLAKMRM  360
ENERMKLENE RMSLELKRIE LGAKL
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184112430.0
Genevisible256330_at0.0
Expression AtlasAT1G76870-
AtGenExpressAT1G76870-
ATTED-IIAT1G76870-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00242DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT1G76870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT1G76870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792830.0AC079283.4 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001323232.10.0transcription factor
RefseqNP_001323233.10.0transcription factor
RefseqNP_177813.10.0transcription factor
TrEMBLA0A384LLE40.0A0A384LLE4_ARATH; Uncharacterized protein
TrEMBLQ9C6K40.0Q9C6K4_ARATH; Transcription factor
STRINGAT1G76870.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Representative plantOGRP27961329
Publications ? help Back to Top
  1. Nicola
    Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control.
    Plant Physiol., 2006. 141(2): p. 663-73
    [PMID:16632591]
  2. Efroni I, et al.
    Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
    Dev. Cell, 2013. 24(4): p. 438-45
    [PMID:23449474]