PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000468G0060
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family NAC
Protein Properties Length: 355aa    MW: 39038.1 Da    PI: 6.1391
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000468G0060genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.82.6e-54231501129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP dee++++yL++k+ +++++   vi evd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgkdke+++
  PH01000468G0060  23 LPPGFRFHPADEEIISHYLTPKALDRRFSS-GVIGEVDLNKCEPWDLPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFR 115
                      79*************************999.99***************99999***************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       +g lvg+kktLvfy grap+gekt Wv+he+rle
  PH01000468G0060 116 GRGILVGMKKTLVFYLGRAPRGEKTGWVIHEFRLE 150
                      ********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-6319173IPR003441NAC domain
PROSITE profilePS5100558.14423173IPR003441NAC domain
PfamPF023656.2E-2724149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSEVSVINQV EVEAEEASAG LELPPGFRFH PADEEIISHY LTPKALDRRF SSGVIGEVDL  60
NKCEPWDLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGIL  120
VGMKKTLVFY LGRAPRGEKT GWVIHEFRLE GKLPHPLPRS AKDEWAVCKV FNKDLTARNG  180
PMAAAGPGLE RVSSFGYISD FLDSVELPPL MDPPFGADVH EVIDFKGPAS TSGHATGGAG  240
AHAAPGMSYR LQAKMEEPLP LRYNNHQQPH MLYSSPYFSL PAVNSGDLPP AIRRYCKAEQ  300
VSGQTSVLSP SRETGLSTDP NAAGCAEISS AVTSQQFLDH LDEPVLDLAD IWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-51151737168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000468G0060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0959590.0FP095959.1 Phyllostachys edulis cDNA clone: bphylf054m05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162549.10.0NAC domain-containing protein 92-like
TrEMBLA0A3B6JIE60.0A0A3B6JIE6_WHEAT; Uncharacterized protein
TrEMBLA0A453I6G20.0A0A453I6G2_AEGTS; Uncharacterized protein
STRINGTraes_4DL_D84567626.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.28e-93Arabidopsis NAC domain containing protein 87