PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G18270.2 | ||||||||
Common Name | ANAC087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 38202.3 Da PI: 5.8912 | ||||||||
Description | Arabidopsis NAC domain containing protein 87 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.2 | 1.1e-55 | 21 | 148 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yLk+kv ++++++ ++ e+d++k+ePwdLp+k+k +eke yfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ kg AT5G18270.2 21 LPPGFRFHPTDEEIITCYLKEKVLNSRFTA-VAMGEADLNKCEPWDLPSKAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGC 117 79*************************999.67***************99999*****************************************9*** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgekt+Wvmheyrle AT5G18270.2 118 LVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 148 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-62 | 18 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.378 | 21 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-29 | 22 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0009005 | anatomy | root | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAVVVEEGVV LNHGGEELVD LPPGFRFHPT DEEIITCYLK EKVLNSRFTA VAMGEADLNK 60 CEPWDLPSKA KMGEKEFYFF CQRDRKYPTG MRTNRATESG YWKATGKDKE IFKGKGCLVG 120 MKKTLVFYRG RAPKGEKTNW VMHEYRLEGK YSYYNLPKSA RDEWVVCRVF HKNNPSTTTQ 180 PMTRIPVEDF TRMDSLENID HLLDFSSLPP LIDPSFMSQT EQPNFKPINP PTYDISSPIQ 240 PHHFNSYQSI FNHQVFGSAS GSTYNNNNEM IKMEQSLVSV SQETCLSSDV NANMTTTTEV 300 SSGPVMKQEM GMMGMVNGSK SYEDLCDLRG DLWDF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-51 | 19 | 176 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-51 | 19 | 176 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-51 | 19 | 176 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-51 | 19 | 176 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-51 | 19 | 176 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-51 | 19 | 176 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.23511 | 0.0 | leaf| root| seed| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 250024_at | 0.0 | ||||
Expression Atlas | AT5G18270 | - | ||||
AtGenExpress | AT5G18270 | - | ||||
ATTED-II | AT5G18270 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G18270.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G18270 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228369 | 0.0 | AK228369.1 Arabidopsis thaliana mRNA for no apical meristem (NAM) -like protein, complete cds, clone: RAFL14-80-C22. | |||
GenBank | BT005713 | 0.0 | BT005713.1 Arabidopsis thaliana clone RAFL14-80-C22 (R20123) putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. | |||
GenBank | BT006070 | 0.0 | BT006070.1 Arabidopsis thaliana clone U20123 putative NAM (no apical meristem) protein (At5g18270) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_974800.1 | 0.0 | NAC domain containing protein 87 | ||||
Swissprot | Q9FK44 | 0.0 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | F4JWK6 | 0.0 | F4JWK6_ARATH; NAC domain containing protein 87 | ||||
STRING | AT5G18270.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT5G18270.2 |
Entrez Gene | 831945 |
iHOP | AT5G18270 |
wikigenes | AT5G18270 |